PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0193251

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 325aa MW: 36744.1 Da PI: 5.2529

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0193251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	267	301	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ RcHm_v2.0_Chr7g0193251 267 KWPYPTEVDKMTLAQVTGLDQKQINNWFINQRKRH 301 679*****************************885 PP
2	ELK	37.3	5.8e-13	221	242	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ LlrKYsgy+++Lk+EFs RcHm_v2.0_Chr7g0193251 221 ELKDKLLRKYSGYISTLKHEFS 242 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MEELCGFSSG SDHYYSSSSS IAMPQENSPL ADYYRRFEPL TAVVPGSSSD PVYYYSGSNS 60 STVSDCVSVA VAGNQRGGEE VSCTTVNAKI ASHPLYPNLV QAYIDCQKVG APPQIAHILE 120 EIRRESDQLS RITVGSSCMG VDPELDEFME TYCDILLKYK SDLTKPFNEA ITFLNSMETQ 180 LNNLANTTDA PAVNSSDDED LSGGEIDVQD SDHQRKHEDH ELKDKLLRKY SGYISTLKHE 240 FSKKKKKGKL PKDAKKILMD WWNLHYKWPY PTEVDKMTLA QVTGLDQKQI NNWFINQRKR 300 HWKPSENMQF AVMESLYGPS TFSRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	1e-101	TALE family protein