PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0190431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 894aa MW: 98955.3 Da PI: 8.9325

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0190431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.1	1.5e-20	802	882	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++ ie+r + ++r++ k +++lWee+s+++ ++g++rsp qCk+ w++l ++y++ k g+++r +++py+++++ RcHm_v2.0_Chr7g0190431 802 KWKPEEVKKFIEMRGKQHSRFQVVKGRMALWEEISRNLLAEGINRSPGQCKSLWSSLVQKYEESKSGKRSR-----KSWPYYEEMD 882 7******************************************************************96.....56*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence
MHLGVLGGLS FYHSIYSPPL PTQMAAVGAL SPFPYSLLWR PKSSNRTVSC SVGSSTAPPT 60 GTRGSNYKRS GRVEGPRKSM EDSVQRKMEQ FYEGRDGPPL RVLPIGGLGE IGMNCMLVGN 120 YDRYILIDAG IMFPDFDELG VQKIIPDTTF IRKWKHKIEA IVITHGHEDH IGALPWVIPA 180 LDPSTPIFAS SFTMELIRKR LKENGIFVPS RLKMFRTKRK FMAGPFEIEP IRVTHSIPDC 240 CGLVLRCADG TILHTGDWKI DESPLDGQGF DREGLEELSK EGVTLMMSDS TNVLSPGRTT 300 SESSVADALM RHISAAQGRV ITTQFASNIH RLGSVKAAAD ATGRKLVFVG MSLRTYLDAA 360 WRDGKAPIDP STLVKVEDID SYAPKDLLIV TTGSQAEPRA ALNLASFGSS HSVKLTKEDI 420 ILYSAKVIPG NESRVMKMLN RISDMGSTIV MGKNEGLHTS GHGYRGELEE VLRIVKPQHF 480 LPIHGELLFL KEHELLGRST GIHHTTVIKN GEMLGVSHLR NRRVLSNGFT LLGKENLQLK 540 YSDGDKAFGT SSDLCVDERL KIALDGIIVI SMEILRPQNV NGLAESSIKG KIRITTRCLW 600 LDKGKLYDAL YKAAHAALSS CPINCPLPHM ERTVSEVLRK LVRKYSGKRP EVIAIAMENP 660 TAVLADEVST RLSGKSHVGY ERSALRKVID GNSNKSRPTR TEANAAKDNT HLQSTTSEQD 720 FEDDGGEVKA PLPVEVSTVN PEKLSSDTKE PDDFWNAMVK LSAGDKLAED KDGLVLQEEH 780 VKKDDSESTE TPNPSKPVKR NKWKPEEVKK FIEMRGKQHS RFQVVKGRMA LWEEISRNLL 840 AEGINRSPGQ CKSLWSSLVQ KYEESKSGKR SRKSWPYYEE MDGALSDSEA MATK

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence

MHLGVLGGLS FYHSIYSPPL PTQMAAVGAL SPFPYSLLWR PKSSNRTVSC SVGSSTAPPT  60
GTRGSNYKRS GRVEGPRKSM EDSVQRKMEQ FYEGRDGPPL RVLPIGGLGE IGMNCMLVGN  120
YDRYILIDAG IMFPDFDELG VQKIIPDTTF IRKWKHKIEA IVITHGHEDH IGALPWVIPA  180
LDPSTPIFAS SFTMELIRKR LKENGIFVPS RLKMFRTKRK FMAGPFEIEP IRVTHSIPDC  240
CGLVLRCADG TILHTGDWKI DESPLDGQGF DREGLEELSK EGVTLMMSDS TNVLSPGRTT  300
SESSVADALM RHISAAQGRV ITTQFASNIH RLGSVKAAAD ATGRKLVFVG MSLRTYLDAA  360
WRDGKAPIDP STLVKVEDID SYAPKDLLIV TTGSQAEPRA ALNLASFGSS HSVKLTKEDI  420
ILYSAKVIPG NESRVMKMLN RISDMGSTIV MGKNEGLHTS GHGYRGELEE VLRIVKPQHF  480
LPIHGELLFL KEHELLGRST GIHHTTVIKN GEMLGVSHLR NRRVLSNGFT LLGKENLQLK  540
YSDGDKAFGT SSDLCVDERL KIALDGIIVI SMEILRPQNV NGLAESSIKG KIRITTRCLW  600
LDKGKLYDAL YKAAHAALSS CPINCPLPHM ERTVSEVLRK LVRKYSGKRP EVIAIAMENP  660
TAVLADEVST RLSGKSHVGY ERSALRKVID GNSNKSRPTR TEANAAKDNT HLQSTTSEQD  720
FEDDGGEVKA PLPVEVSTVN PEKLSSDTKE PDDFWNAMVK LSAGDKLAED KDGLVLQEEH  780
VKKDDSESTE TPNPSKPVKR NKWKPEEVKK FIEMRGKQHS RFQVVKGRMA LWEEISRNLL  840
AEGINRSPGQ CKSLWSSLVQ KYEESKSGKR SRKSWPYYEE MDGALSDSEA MATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein