PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0190051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 241aa MW: 26057.2 Da PI: 5.2388 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.5 | 3.1e-56 | 53 | 157 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+t RcHm_v2.0_Chr7g0190051 53 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 139 89*****998899************************************************************************** PP NF-YC 85 rtdifdflvdivprdelk 102 rtdifdflvdivprde+k RcHm_v2.0_Chr7g0190051 140 RTDIFDFLVDIVPRDEIK 157 ***************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MDNNPNAAAT ATAITAQHQH QAQSATYPPA QGGPPSSVAA APFHHLLQAQ QQQLQMFWNY 60 QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPV LFAKACELFI LELTIRSWLH 120 AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA GLGAVGMVGT TASGVPYYYP 180 PIGQPAGAPG GMMIGRPAMD PTGVYAQPPS QAWQSVWQTA ADDGSYGSGG SSGQGNLDGQ 240 S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 132 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 9e-88 | NF-YC family protein |