PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0189811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 409aa MW: 45172.9 Da PI: 8.3116

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0189811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.1	1.8e-41	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ RcHm_v2.0_Chr7g0189811 97 CLVDGCRSDLSTCRDYHRRHKVCELHSKTPMVTINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MDWNLKAPSS WDLSELEQET FSNLDTVNGS SSLGDQHRAI KGDFSVDLKL GQLSDSGNNQ 60 LVDMLKQHGG PKPSSSSPSG ASKRSRAAYN GSQTVSCLVD GCRSDLSTCR DYHRRHKVCE 120 LHSKTPMVTI NGQKQRFCQQ CSRFHSLEEF DEGKRSCRKR LDGHNRRRRK PQPEPLSRSG 180 SFLSNYQGTQ LLPFSSSLVY PSTTVVNPTW AGVVKAEADT GLHNHHLQHQ NMFIGSSTSS 240 SSYNKGAGNK QQFALFQSSN NNQTHGASVC QPLLNSISMS ETATSGAAAS EKSKMFCDRL 300 TTTRIHPDSD CALSLLSSPQ TQQQTSEMGL RHMMQQPNSI SLMHHHRLGL HGNNNSNSIE 360 PMDSVLVSHG SSDHAHNVHQ SSGMFHMGSD ESQGNHHHQS PQKLPFHWE

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MDWNLKAPSS WDLSELEQET FSNLDTVNGS SSLGDQHRAI KGDFSVDLKL GQLSDSGNNQ  60
LVDMLKQHGG PKPSSSSPSG ASKRSRAAYN GSQTVSCLVD GCRSDLSTCR DYHRRHKVCE  120
LHSKTPMVTI NGQKQRFCQQ CSRFHSLEEF DEGKRSCRKR LDGHNRRRRK PQPEPLSRSG  180
SFLSNYQGTQ LLPFSSSLVY PSTTVVNPTW AGVVKAEADT GLHNHHLQHQ NMFIGSSTSS  240
SSYNKGAGNK QQFALFQSSN NNQTHGASVC QPLLNSISMS ETATSGAAAS EKSKMFCDRL  300
TTTRIHPDSD CALSLLSSPQ TQQQTSEMGL RHMMQQPNSI SLMHHHRLGL HGNNNSNSIE  360
PMDSVLVSHG SSDHAHNVHQ SSGMFHMGSD ESQGNHHHQS PQKLPFHWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	171	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-73	SBP family protein