PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0189781
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 166aa    MW: 18921.3 Da    PI: 9.8759
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0189781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.8e-3384142159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vk+s+fprsYY+Ct++gC+vkk+v+r ++d+++v++tYeg H h+
  RcHm_v2.0_Chr7g0189781  84 LDDGYRWRKYGQKTVKNSNFPRSYYKCTHQGCNVKKQVQRLSKDEEIVVTTYEGIHIHP 142
                             59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MEHNQIRFFG LSPSLASPNF SSSTASSIPQ LFPHVHSSNA VPMDKCGTSY SSVNKLKSIT  60
KDSGDKETKK HKIAFQTRSQ VDVLDDGYRW RKYGQKTVKN SNFPRSYYKC THQGCNVKKQ  120
VQRLSKDEEI VVTTYEGIHI HPTENSDETF EHILSHMRKT VKDGIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.17e-48WRKY family protein