PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0188751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 352aa MW: 39832.6 Da PI: 6.119

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0188751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.2	3.9e-22	39	135	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 rWt++e+l+Lie+++ +e+ ++ +k +p+W+ vs+++++rg++r+p+qC+++w+nl ++kki+++e++ + e++ RcHm_v2.0_Chr7g0188751 39 RWTRKETLTLIEGKKVIENGIQFQKgrrstaalgpdPVEPKWDLVSSFCKQRGVSRGPVQCRKRWSNLLVDFKKIRNWESQIKGEAE 125 8****************9998766677888888899******************************************99999 PP trihelix 77 stcpyfdqle 86 s +++ ++l+ RcHm_v2.0_Chr7g0188751 126 SFWVMRNDLR 135 9999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MASDSSKHED GGSPSDQVEK LQVPSGSSQE RMKTIRHPRW TRKETLTLIE GKKVIENGIQ 60 FQKGRRSTAA LGPDPVEPKW DLVSSFCKQR GVSRGPVQCR KRWSNLLVDF KKIRNWESQI 120 KGEAESFWVM RNDLRRDKKL PGFFDRDVYN VLDGKDATAK PASPLAVLCP MPLNSIPMED 180 VCHVTEEAAA EEEEEEVEEE EPEKFFNSIR NDSTENDLFS DFEESGQEET TINSKKEQKV 240 TGSPTKIFTT PVPTPGPVKG KRGLGSDTGR EEKQKQRRLS RDGCEDNCSD QLIRVLEKNS 300 KMMNAQLEAH NKNYQLDREK NKEQNNNLLA AIKNVTDALV RIADKLTSHS GD

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MASDSSKHED GGSPSDQVEK LQVPSGSSQE RMKTIRHPRW TRKETLTLIE GKKVIENGIQ  60
FQKGRRSTAA LGPDPVEPKW DLVSSFCKQR GVSRGPVQCR KRWSNLLVDF KKIRNWESQI  120
KGEAESFWVM RNDLRRDKKL PGFFDRDVYN VLDGKDATAK PASPLAVLCP MPLNSIPMED  180
VCHVTEEAAA EEEEEEVEEE EPEKFFNSIR NDSTENDLFS DFEESGQEET TINSKKEQKV  240
TGSPTKIFTT PVPTPGPVKG KRGLGSDTGR EEKQKQRRLS RDGCEDNCSD QLIRVLEKNS  300
KMMNAQLEAH NKNYQLDREK NKEQNNNLLA AIKNVTDALV RIADKLTSHS GD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-56	Trihelix family protein