PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0188681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 29358.4 Da PI: 8.0026 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 55 | 104 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f +ae Aa a+++a+++++g RcHm_v2.0_Chr7g0188681 55 HYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFESAEAAALAYDEAALRFKG 104 69*******.**********93....36***********************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MVSALSQVIA NAHEQNPLQL DHQVHDIPLI ISADNHVEQS KPAVVFQAQG NMRQHYRGVR 60 RRPWGKWAAE IRDPQKAARV WLGTFESAEA AALAYDEAAL RFKGSKAKLN FPERVQGISP 120 STSSGRYLAI SSIDHDQRVD NSAPPAAPIS QLTTYSIPND INFDYDAQHL GSSTASNRNV 180 DFGVSSSQNY GQDRIMPEIN VPTTSSSTSS GSSMPSHHQE VRLQQQEDQQ QLLRLPMMPF 240 GGSSSSSSDP PAKYRRDSSG RGDYRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 4e-33 | ERF family protein |