PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0188161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 761aa MW: 82167.1 Da PI: 5.9492 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95.1 | 6.8e-30 | 92 | 176 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f++lea RcHm_v2.0_Chr7g0188161 92 RWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 176 8*********************************************************************866665..******985 PP | |||||||
2 | trihelix | 106.8 | 1.4e-33 | 491 | 576 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++r+pk+Ckekwen+nk++kk+ke++k r +e+ +tcpyf++l+a RcHm_v2.0_Chr7g0188161 491 RWPKAEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYKRNPKRCKEKWENINKYFKKVKESNKAR-PEDAKTCPYFHELDA 576 8********************************************************************98.99999********85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 761 aa Download sequence |
MQGGQSHYGA SAPAPAPAAE GAAATTSMAA EAAAADQTHV VEEASPISSR PPAGGAISAV 60 NLDELMTLSG AAADVAADQG GGGGGGSGGG NRWPRQETLA LLKIRSEMDV AFRDATLKGP 120 LWEDVSRKLA ELGYKRNAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYKF FSELEALHGT 180 TANVSASPPV HVANTPVSIG FGSISSPMPI SSFRMTSGSG TTSTIPGMTS QGGGAGAGAI 240 PVMPSSQPPP PPAPPMDMNF SSNSSSSSSH DEYEDDDEVA GEPSTNTSRK RKRGLGTRSS 300 SSREGGGSTR RMMEFFEILM KQVMQKQETM QQRFLEVIEK REQDRNIRED AWKRQEMARL 360 TREHELMTQE RAISASRDAA IIAFLQKITG QTIQLPPPLN VHNAPPPPVP PSVSSVHVTP 420 VSAPPPQPSV QQFHPHATPT AQVSRHQIQT AIPPHPQTEV VMAVPEQQVA PPQENVVGSG 480 GGFEATTSSS RWPKAEVLAL IKLRSGLETR YQEAGPKGPL WEEISAGMQR MGYKRNPKRC 540 KEKWENINKY FKKVKESNKA RPEDAKTCPY FHELDALYRK RVLGGGPSGG GSSSSLGNQN 600 IQQQPPATQG TVAASVPAPQ TQGTVAATDQ SGNKNGDHSP NLQKNLFGDA PEEAAKKPED 660 IVKELMGQQQ QQHHHHPQQL LNQQGVEQQL VVEDYDRVEE ADSDINLDQD EEEDEDDEED 720 EEMDEESRKM DYKIEFQKQQ NTGPSSNGGG NGAPSFLAMV Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | KRNAKKCKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 9e-49 | Trihelix family protein |