PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0187821
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 446aa    MW: 48913.1 Da    PI: 7.6905
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0187821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.78.6e-32107211199
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+
  RcHm_v2.0_Chr7g0187821 107 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQ 193
                             89***************************966778999************************************************* PP

                             E-.SS.SEE..EEEEE-S CS
                      B3  84 ld.gr.sefelvvkvfrk 99 
                             +  g+  + +l++ ++r+
  RcHm_v2.0_Chr7g0187821 194 RGlGEsGKDRLYIDWRRR 211
                             666776888999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    
MNFGASRDGG GGFSEDEIRG KLPFSSYSPT SPSSSSSSPH FNNTSTATAT LLPGGLSSWD  60
TYGGGGGPDT RLELMDSSPR NADNNQESNN EPHTTATVAA IEKEHMFDKV VTPSDVGKLN  120
RLVIPKQHAE KYFPLDSSTN EKGLLLNFED RTGKAWRFRY SYWNSSQSYV MTKGWSRFVK  180
EKKLDAGDIV SFQRGLGESG KDRLYIDWRR RPEAVDPNHH HHSLHHQHHN FGIPPPHHYS  240
FHRSVPWSPL LMRPPGSSPT IAREHHLQQM NYSTNIHPYR NSSAGGGGGY GYGNVVNMNP  300
VCSGPVYYLR SGGGGGSVIP QQLHQQEGSA TTHAHHHHQV GLGQLGRVNV VEPMVLESVP  360
VVHGKVAAAG KRLRLFGVNM DCPVSDQSDE CDILSSSTTT AMVLSQQPHQ PPLQLRLYDG  420
TPATTTDFFN RGKTSSSSSM SLDFDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-67B3 family protein