PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0186621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 897aa MW: 101064 Da PI: 6.224

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0186621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.6	3.8e-12	518	542	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCk+G++CkF+H++ RcHm_v2.0_Chr7g0186621 518 KPICEYYLKTGTCKFGPSCKFHHPK 542 689********************96 PP
2	WRKY	83.2	2.6e-26	786	844	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K k+s++pr+YY+C+++gCpvkk+ver+ +dp++v++ Y+g Hnh+ RcHm_v2.0_Chr7g0186621 786 LDDGFKWRKYGKKFGKNSTNPRNYYKCAYEGCPVKKRVERDGQDPSYVITCYNGVHNHT 844 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence
MRNVQENLLL GRNHSDKQDD LDKKMSELLK VHQEVLKAQK EMFDMMRVQH EAVHEAMQRI 60 RADAVQNVQG ETAPAPAPAP ALRIVFWVLY DVVIQVKVKN IMCKRLLQEF KSTLDFLKPL 120 IEEMAESNKL LHLPEQEQEK FIIQMREGVE LIGKCSKVSK WHSYKKYACT NKLLKLDESL 180 RGLFHKMSMQ IAIHVKEGLI SISSMEAMIK KIEESGVIQN QSQVVLTKPQ PPLHEAGLDV 240 LDTHGSKDVE GTGDDLNEKE VGVKQIGRDG TRQNEKEIEG LSEVPENSSP KTTLDVQGTK 300 DINESLDSES VHIAQTKQSQ GTRMVEAPVA ESYKFPFLMV ESDVYLRELK KKIFEDQVAM 360 LVITGPAGCG KTTLARMFCE DQEVKMKFKN IFFVHVSENP RLDFIVQQLY EQKDSVVLEL 420 QEDAVNWLQQ FLKETGGDPS LLVLDDVWSG SESLLDKFDG LRTSMHKILV TSRSEFPRFD 480 CYLENLKSLD DEEEMAHLKG KVVAAVRATG DYPERVGKPI CEYYLKTGTC KFGPSCKFHH 540 PKQGIGYLSS LYGLTQLSSP THALERPYTS VVPSSVGPSS SSPNEQAFPE RPREPECQHY 600 LRTGYYKFVP SCRYHHPRDQ IAPRTNCLLS PVGLLGNSGS NAWPSFSQVS LSMEDFQTSL 660 DLKLNAQHSL LQTPMSPCVS ISRRISSNDK SSQSDVEDKS ELDEIQSQIS GVTVPESLHD 720 PLESKDQCPM NVNNTLEYAA SGTTPNSVNV DGQSVTCNSS EIGSISQKQG VKEKVAFRTK 780 SEIEILDDGF KWRKYGKKFG KNSTNPRNYY KCAYEGCPVK KRVERDGQDP SYVITCYNGV 840 HNHTSLGKRT QRVPASHPQP LPFPLPIGKE ESFTFDHLAD DNQEESVLFD HLADHIQ

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence

MRNVQENLLL GRNHSDKQDD LDKKMSELLK VHQEVLKAQK EMFDMMRVQH EAVHEAMQRI  60
RADAVQNVQG ETAPAPAPAP ALRIVFWVLY DVVIQVKVKN IMCKRLLQEF KSTLDFLKPL  120
IEEMAESNKL LHLPEQEQEK FIIQMREGVE LIGKCSKVSK WHSYKKYACT NKLLKLDESL  180
RGLFHKMSMQ IAIHVKEGLI SISSMEAMIK KIEESGVIQN QSQVVLTKPQ PPLHEAGLDV  240
LDTHGSKDVE GTGDDLNEKE VGVKQIGRDG TRQNEKEIEG LSEVPENSSP KTTLDVQGTK  300
DINESLDSES VHIAQTKQSQ GTRMVEAPVA ESYKFPFLMV ESDVYLRELK KKIFEDQVAM  360
LVITGPAGCG KTTLARMFCE DQEVKMKFKN IFFVHVSENP RLDFIVQQLY EQKDSVVLEL  420
QEDAVNWLQQ FLKETGGDPS LLVLDDVWSG SESLLDKFDG LRTSMHKILV TSRSEFPRFD  480
CYLENLKSLD DEEEMAHLKG KVVAAVRATG DYPERVGKPI CEYYLKTGTC KFGPSCKFHH  540
PKQGIGYLSS LYGLTQLSSP THALERPYTS VVPSSVGPSS SSPNEQAFPE RPREPECQHY  600
LRTGYYKFVP SCRYHHPRDQ IAPRTNCLLS PVGLLGNSGS NAWPSFSQVS LSMEDFQTSL  660
DLKLNAQHSL LQTPMSPCVS ISRRISSNDK SSQSDVEDKS ELDEIQSQIS GVTVPESLHD  720
PLESKDQCPM NVNNTLEYAA SGTTPNSVNV DGQSVTCNSS EIGSISQKQG VKEKVAFRTK  780
SEIEILDDGF KWRKYGKKFG KNSTNPRNYY KCAYEGCPVK KRVERDGQDP SYVITCYNGV  840
HNHTSLGKRT QRVPASHPQP LPFPLPIGKE ESFTFDHLAD DNQEESVLFD HLADHIQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-34	WRKY family protein