PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0186441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 26422 Da PI: 7.8904 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WTt Ed ll+++++ +G g+W + +++ g+ R++k+c++rw +yl RcHm_v2.0_Chr7g0186441 14 RGPWTTIEDTLLIQYIQSHGEGHWMSLPKKAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w++ RcHm_v2.0_Chr7g0186441 67 RGNITPDEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999******************.*********.***********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MGRTPCCSKE GLQRGPWTTI EDTLLIQYIQ SHGEGHWMSL PKKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNI TPDEEDLIVR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT NRSKRLNNAG 120 STERGVSSVE GQLKKDDRGC VAKVKVHQPK AIRVSANSII RNNNILAELG HHDAEVSNDL 180 HDHKHFGEAL VCENVMDFDV FIQGYEEYQQ QLLKADQDLD GVHLDSFVDS LLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 3e-62 | MYB family protein |