PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0186181

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Nin-like

Protein Properties

Length: 953aa MW: 105354 Da PI: 4.8457

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0186181	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.3e-29	576	626	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ RcHm_v2.0_Chr7g0186181 576 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 626 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence
MSDPEEDRAP AIFPKSKNLD AMDFDIDVSW PLDQIQFLSN PTSPLLFSPA DDPCSPLWAF 60 PDVDHDKLAG GGGRALPDPA QFVSDANPVV EKPRENEDNR MLPSPFSGLD PNPDGYFLIK 120 ERITQALRYL KESSDQHVLA QVWAPVKDGS RYVLTTSGQP FVLDPHDGLH QYRMVSLMYM 180 FSVDGENDGV LGLPGRVFQQ KMPEWTPNVQ YYSIKEYPRL DHAQHYNVQG TLALPIFEPS 240 GRSCIGVIEL IMTSQKINYA PEVDKICKAL EAVCLKSSEI LDHTSTQIQI RNEGRQNALT 300 EILEILTMVC ETHKLPLAQT WVPCMHRNVL AYGGGMKKSC TSFDGSCMEQ VCMSTTDVAV 360 YIVDAHMWGF REACVEHHLQ KGQGVAGRAF LSRNACFCRD ISQFRKTEYP LVHYARMFEL 420 TSSFAICLQS THTGNDDYIL EFFLPPSIRD SCEQQTLLGS ILAIVKDHCQ NLKVASGIGL 480 AEEGTVEIVQ ASINEGLDSR LECIQIPCSM EPLPGSSLPN REEMVRLNPA KPQLMVDIDA 540 INDERNAVHN GGKNNISVPE NKDIKKTSER KRGKTEKSIS LEVLQQYFAG SLKDAAKSLG 600 VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKLVIESV QGGEGAFGLS PLTTSPLTGA 660 VGSISRPYTS SQPYEVQGEK KDSPSSSTPG REGQAGIEDP LQDIGNGSNS SKTGSGSREA 720 STGTPTSHGS CQGSPANGSA MVKDPFVSSI QEQFVEVDRS PESAFRPPEE LYVPVPCSIP 780 DALLMTEPEE PYRGMLLEDA GSSKDLRNLC PFTDITVHEQ VPEVFWTDPQ CPDSAPNQSM 840 STLAYTMPHN TSLQEMRSVT IKAAYKDDII RFRISMSSCI VDLKEEVAKR LKLEVGTFDM 900 KYMDDDLEWV LIACDADLQE CMEICRSSGS NMIRLSVHDI LSNLGSSSES TEE

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence

MSDPEEDRAP AIFPKSKNLD AMDFDIDVSW PLDQIQFLSN PTSPLLFSPA DDPCSPLWAF  60
PDVDHDKLAG GGGRALPDPA QFVSDANPVV EKPRENEDNR MLPSPFSGLD PNPDGYFLIK  120
ERITQALRYL KESSDQHVLA QVWAPVKDGS RYVLTTSGQP FVLDPHDGLH QYRMVSLMYM  180
FSVDGENDGV LGLPGRVFQQ KMPEWTPNVQ YYSIKEYPRL DHAQHYNVQG TLALPIFEPS  240
GRSCIGVIEL IMTSQKINYA PEVDKICKAL EAVCLKSSEI LDHTSTQIQI RNEGRQNALT  300
EILEILTMVC ETHKLPLAQT WVPCMHRNVL AYGGGMKKSC TSFDGSCMEQ VCMSTTDVAV  360
YIVDAHMWGF REACVEHHLQ KGQGVAGRAF LSRNACFCRD ISQFRKTEYP LVHYARMFEL  420
TSSFAICLQS THTGNDDYIL EFFLPPSIRD SCEQQTLLGS ILAIVKDHCQ NLKVASGIGL  480
AEEGTVEIVQ ASINEGLDSR LECIQIPCSM EPLPGSSLPN REEMVRLNPA KPQLMVDIDA  540
INDERNAVHN GGKNNISVPE NKDIKKTSER KRGKTEKSIS LEVLQQYFAG SLKDAAKSLG  600
VCPTTMKRIC RQHGISRWPS RKINKVNRSL SKLKLVIESV QGGEGAFGLS PLTTSPLTGA  660
VGSISRPYTS SQPYEVQGEK KDSPSSSTPG REGQAGIEDP LQDIGNGSNS SKTGSGSREA  720
STGTPTSHGS CQGSPANGSA MVKDPFVSSI QEQFVEVDRS PESAFRPPEE LYVPVPCSIP  780
DALLMTEPEE PYRGMLLEDA GSSKDLRNLC PFTDITVHEQ VPEVFWTDPQ CPDSAPNQSM  840
STLAYTMPHN TSLQEMRSVT IKAAYKDDII RFRISMSSCI VDLKEEVAKR LKLEVGTFDM  900
KYMDDDLEWV LIACDADLQE CMEICRSSGS NMIRLSVHDI LSNLGSSSES TEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein