PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0186081
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 672aa    MW: 74700.3 Da    PI: 6.982
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0186081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.7e-24126226198
                             EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                             f+kvlt sd++++g +++ +k+a+e+     + + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF
  RcHm_v2.0_Chr7g0186081 126 FCKVLTASDTSTHGGFSVLRKHATEClppldKTQATPTQELVAKDLHGYEWRFKHIFRGSPRRHLLTTGWSTFVTSKRLSAGDSFVF 212
                             99**************************998444455669*********************************************** PP

                             EE-SSSEE..EEEEE- CS
                      B3  83 kldgrsefelvvkvfr 98 
                                + +++ l+v+++r
  RcHm_v2.0_Chr7g0186081 213 L--RGESGDLRVGIRR 226
                             *..4489999****98 PP

2Auxin_resp105.75.4e-35252331183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha++t++ F v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d++p +W +S+WrsLk
  RcHm_v2.0_Chr7g0186081 252 ASHAVATQTLFVVYYKPRT--SQFIISLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISP-HWADSEWRSLK 331
                             789***************6..9***********************************************99.*********96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    
MMTNQAGSYS QPEGGDVLYP ELWKACAGPL VEVPRHKERV YYFPQGHMEQ LEASTTTNPE  60
VNQGIPRFNL PSKILCRVMH VQLLAEQETD EVYAQITLIP EANQTTKPTS PDECPFEPER  120
PKVYPFCKVL TASDTSTHGG FSVLRKHATE CLPPLDKTQA TPTQELVAKD LHGYEWRFKH  180
IFRGSPRRHL LTTGWSTFVT SKRLSAGDSF VFLRGESGDL RVGIRRLARQ QSSMPSSVIS  240
SQSMHVGVLA TASHAVATQT LFVVYYKPRT SQFIISLNKY LEAVNNKFSV GMRFKMRFEG  300
EDAPERRFSG TIIGLEDISP HWADSEWRSL KVQWDESASI PRPDRVSPWE IEPYVASIPA  360
SLSPSTVLKN KRPRLLPEIP APDTASSITW HDVTQLSGAA EGQRSENHVS LNHQQADIIS  420
SSTCISRTKT DGGWLSSPTV EDSKSGPAWP RFSGYSTPTS SKPKNDLILD HVEKRKKTET  480
GASCLIFGVD FSSHLNSSHS VEKPPPQPII ASTRATEGQV SISVEAESDQ KSDLSKASKE  540
SKAQFQVSPK ETLSKQSSSA STRSRVKVQM QGIAVGRAVD LTMLEGYDQL IVELEEMFDI  600
KGQIGPRNKW EIVFTDDEGD MMLAGDDPWL EFCNMVRRIF ICSSQDVKKI SAGRKRLSMS  660
SLEVEGTVTS SD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0ARF family protein