PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0186081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | ARF | ||||||||
Protein Properties | Length: 672aa MW: 74700.3 Da PI: 6.982 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.7e-24 | 126 | 226 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kvlt sd++++g +++ +k+a+e+ + + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF RcHm_v2.0_Chr7g0186081 126 FCKVLTASDTSTHGGFSVLRKHATEClppldKTQATPTQELVAKDLHGYEWRFKHIFRGSPRRHLLTTGWSTFVTSKRLSAGDSFVF 212 99**************************998444455669*********************************************** PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 + +++ l+v+++r RcHm_v2.0_Chr7g0186081 213 L--RGESGDLRVGIRR 226 *..4489999****98 PP | |||||||
2 | Auxin_resp | 105.7 | 5.4e-35 | 252 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d++p +W +S+WrsLk RcHm_v2.0_Chr7g0186081 252 ASHAVATQTLFVVYYKPRT--SQFIISLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISP-HWADSEWRSLK 331 789***************6..9***********************************************99.*********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 672 aa Download sequence |
MMTNQAGSYS QPEGGDVLYP ELWKACAGPL VEVPRHKERV YYFPQGHMEQ LEASTTTNPE 60 VNQGIPRFNL PSKILCRVMH VQLLAEQETD EVYAQITLIP EANQTTKPTS PDECPFEPER 120 PKVYPFCKVL TASDTSTHGG FSVLRKHATE CLPPLDKTQA TPTQELVAKD LHGYEWRFKH 180 IFRGSPRRHL LTTGWSTFVT SKRLSAGDSF VFLRGESGDL RVGIRRLARQ QSSMPSSVIS 240 SQSMHVGVLA TASHAVATQT LFVVYYKPRT SQFIISLNKY LEAVNNKFSV GMRFKMRFEG 300 EDAPERRFSG TIIGLEDISP HWADSEWRSL KVQWDESASI PRPDRVSPWE IEPYVASIPA 360 SLSPSTVLKN KRPRLLPEIP APDTASSITW HDVTQLSGAA EGQRSENHVS LNHQQADIIS 420 SSTCISRTKT DGGWLSSPTV EDSKSGPAWP RFSGYSTPTS SKPKNDLILD HVEKRKKTET 480 GASCLIFGVD FSSHLNSSHS VEKPPPQPII ASTRATEGQV SISVEAESDQ KSDLSKASKE 540 SKAQFQVSPK ETLSKQSSSA STRSRVKVQM QGIAVGRAVD LTMLEGYDQL IVELEEMFDI 600 KGQIGPRNKW EIVFTDDEGD MMLAGDDPWL EFCNMVRRIF ICSSQDVKKI SAGRKRLSMS 660 SLEVEGTVTS SD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | ARF family protein |