PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0185411

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 532aa MW: 59531 Da PI: 6.1185

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0185411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.8	4.6e-08	89	132	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + k++++fC ++ +lC+ C + H+ H++v RcHm_v2.0_Chr7g0185411 89 VRACDSCLVKRARWFCGADDAFLCQRCDASVHSAnllasrHERV 132 678*****************************668888888876 PP
2	CCT	67.8	3e-23	461	504	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ RcHm_v2.0_Chr7g0185411 461 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 504 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MVRVSGSLSL THTDHSQTIT PHEIIEPFGP LNKYVKPPQY SLAVHPTLNF SSVTFTLCNC 60 VIPSKIFSCF SCAMITEKKA ANAMGGNSVR ACDSCLVKRA RWFCGADDAF LCQRCDASVH 120 SANLLASRHE RVRLKSASHK LGDHLAIEPP VPTWQQGVKR KARTPRGHGN HNKSGKDEAG 180 KVLGQSMPFV PEIGSEEVDY CCLEDDHESE DLEQLLYRVP IFDPFEAEVC NNMTNIDHHE 240 VKMGNGHEDY GARTSSPSDE LDNLQGLILP SDMELAEFAA DVENMLGKGF DEDCSDIKGL 300 GLLDGTKEEE DHGMDVCIGI EERKLVKIEE EEDQGMECEF NPSVLDWNFD YDDESTAVLL 360 GGSTNTDQKE EEKVAVLMEA EKKRKKICLR LNHEAVISAW ASQGSPWTTG VKPELNPDDG 420 WPDCMGIWGT DQIMNLQGYG DGSAAGCRMG RRGDNEQRPG REARVSRYRE KRRTRLFSKK 480 IRYEVRKLNA EKRPRMKGRF VKRTSFQMGM GSSSTTNTSA APHYQQHQHL KK

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MVRVSGSLSL THTDHSQTIT PHEIIEPFGP LNKYVKPPQY SLAVHPTLNF SSVTFTLCNC  60
VIPSKIFSCF SCAMITEKKA ANAMGGNSVR ACDSCLVKRA RWFCGADDAF LCQRCDASVH  120
SANLLASRHE RVRLKSASHK LGDHLAIEPP VPTWQQGVKR KARTPRGHGN HNKSGKDEAG  180
KVLGQSMPFV PEIGSEEVDY CCLEDDHESE DLEQLLYRVP IFDPFEAEVC NNMTNIDHHE  240
VKMGNGHEDY GARTSSPSDE LDNLQGLILP SDMELAEFAA DVENMLGKGF DEDCSDIKGL  300
GLLDGTKEEE DHGMDVCIGI EERKLVKIEE EEDQGMECEF NPSVLDWNFD YDDESTAVLL  360
GGSTNTDQKE EEKVAVLMEA EKKRKKICLR LNHEAVISAW ASQGSPWTTG VKPELNPDDG  420
WPDCMGIWGT DQIMNLQGYG DGSAAGCRMG RRGDNEQRPG REARVSRYRE KRRTRLFSKK  480
IRYEVRKLNA EKRPRMKGRF VKRTSFQMGM GSSSTTNTSA APHYQQHQHL KK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	386	KKRKK
2	472	488	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	4e-85	CO-like family protein