PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0185311
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 381aa    MW: 43190.4 Da    PI: 5.1324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0185311genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.91.2e-13106147146
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                             s ykGVr++k +g+++AeIrd +     r  r ++g+f+taeeA  a+
  RcHm_v2.0_Chr7g0185311 106 SVYKGVRRRK-WGKYAAEIRDpF-----RgVREWIGTFDTAEEASVAY 147
                             78*****998.**********66.....56**************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MPGIRTQVLN QDVCYKKLMA KQPRKEEDTS FKKKVRIMYT DPYATDSSSE DDEQCNATEY  60
QSVPRKKVFV SEIVVGGMQD ESCVSGGRIG NTNKSDGSKK NHRSYSVYKG VRRRKWGKYA  120
AEIRDPFRGV REWIGTFDTA EEASVAYQNR RLLFDNMKLE LKRKTEYKDL QLSNEAFKSS  180
HLTVESNHQY ECQSFHLLRE SRDSSVAAAA NETFSYEETA SLFCHPSPSS VFQPEGSVQP  240
LSKEELSNLK FPEVPISSAI SAEEGYVRPL SEEELSVLKF PEVPISSAII AEEGSVQPLS  300
EEEHFNLKFT QVPILSPIRT EVWGFMNLGF VDNDIFDGLD QLFVGRSDIV DLPVHRHGNG  360
ENISLPPSKF LMSDLAGFYW D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115KGVRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.18e-25ERF family protein