PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0183571
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 31025.9 Da    PI: 8.6585
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0183571genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.61.1e-30959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  RcHm_v2.0_Chr7g0183571  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                            79***********************************************96 PP
2K-box102.36.3e-34861815100
                   K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                             ++ + +++ + +++ e+akLk+++e Lqr+q h++GedL+sLslkeLq+LeqqL+++lk+iRs+Kn+l++e+i+ lqkk k lqe+n
  RcHm_v2.0_Chr7g0183571  86 DNDHDQDQSNGNWTLEHAKLKARVEVLQRNQSHFMGEDLQSLSLKELQNLEQQLDSALKHIRSRKNQLMYESISVLQKKDKVLQEQN 172
                             33347889999**************************************************************************** PP

                   K-box  92 kaLrkklee 100
                             + L+kk++e
  RcHm_v2.0_Chr7g0183571 173 NLLTKKVKE 181
                             ******986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SCMERILERY ERYSYAERQL LGNNHDNDHD QDQSNGNWTL EHAKLKARVE VLQRNQSHFM  120
GEDLQSLSLK ELQNLEQQLD SALKHIRSRK NQLMYESISV LQKKDKVLQE QNNLLTKKVK  180
EKEKEREVAG SAPQAQAQAQ WEQMQRHSLD SSSSSAFLPQ ALQSLNFRGS SGDYDHDEET  240
PPPPPPQHLA AAAANSNTLL PPWMLRHLNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-91MIKC_MADS family protein