PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0183521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29099 Da PI: 9.5098 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.9 | 4.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs +gklye++s RcHm_v2.0_Chr7g0183521 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 104.7 | 1.1e-34 | 79 | 174 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 + ++ ++++++++qe+ kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk+iRs+K++++l+++++lq++e++l e+n RcHm_v2.0_Chr7g0183521 79 EANQPVNETQQNSYQEYLKLKARVEVLQRSQRNLLGEDLGPLNTKELEQLEHQLESSLKHIRSTKTQFMLDELSDLQNREQMLVETN 165 55665667799**************************************************************************** PP K-box 92 kaLrkklee 100 k+Lr+klee RcHm_v2.0_Chr7g0183521 166 KSLRRKLEE 174 ******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSG RGKLYEFCSS 60 LSMMKTLEKY HRCNYGALEA NQPVNETQQN SYQEYLKLKA RVEVLQRSQR NLLGEDLGPL 120 NTKELEQLEH QLESSLKHIR STKTQFMLDE LSDLQNREQM LVETNKSLRR KLEETNLQGA 180 PLRLAWDGGY GQNNIHQHNN RLPPQSQGLF QPLQGNNTSA LQIGYTPLSS DHHHQMNAGN 240 PGQNVNGFIP GWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-92 | MIKC_MADS family protein |