PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0183501

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 507aa MW: 55358.8 Da PI: 8.2855

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0183501	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.6	1.3e-41	141	217	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q RcHm_v2.0_Chr7g0183501 141 CQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQV 217 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MESWSCISEG KGFVPDETIS HTDSLARNRS ALMGWDLKIP CTFESQGFGE LGLAEMLGKH 60 LPRSTTSMGT LNPFFGEDES TSKLSSSIVE SNSRDSSLFD LKLDAYTSKS SKKASIFSTS 120 ESSTPAKRMR VSGVYSPTAY CQVYGCNKDL SSSKDYHKRH KVCEAHSKTA KVIVKGIEQR 180 FCQQCSRFHL LAEFDDGKRS CRKRLAGHNE RRRKPQVRIH SGRDGRLLQS YSGSSFPGTM 240 FTAASFVCQD ILPSSILDAE NYRTSDCRRI KVEGGTQQRP SSGVPVTNGH LHLKPVFSSY 300 DNGKQYPPVH VNGTNNLPSG SIIAETGSQY PHELRSLNSG SCSIYHEVAL GSEDFNDLHT 360 TASTVQGLSR IPDSGCALSL LSSQSQNSTS HSSGIPITRP LVMPVSHTHY NLRQVSDKLS 420 SQASTSGVLN KFPSSGPMII SAGSDADNFG VSNGIFQGSQ FLNPKDRLSC DGGTTIDLLQ 480 LSSELQRVED QRQSLQVKKE NDAFCCL

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MESWSCISEG KGFVPDETIS HTDSLARNRS ALMGWDLKIP CTFESQGFGE LGLAEMLGKH  60
LPRSTTSMGT LNPFFGEDES TSKLSSSIVE SNSRDSSLFD LKLDAYTSKS SKKASIFSTS  120
ESSTPAKRMR VSGVYSPTAY CQVYGCNKDL SSSKDYHKRH KVCEAHSKTA KVIVKGIEQR  180
FCQQCSRFHL LAEFDDGKRS CRKRLAGHNE RRRKPQVRIH SGRDGRLLQS YSGSSFPGTM  240
FTAASFVCQD ILPSSILDAE NYRTSDCRRI KVEGGTQQRP SSGVPVTNGH LHLKPVFSSY  300
DNGKQYPPVH VNGTNNLPSG SIIAETGSQY PHELRSLNSG SCSIYHEVAL GSEDFNDLHT  360
TASTVQGLSR IPDSGCALSL LSSQSQNSTS HSSGIPITRP LVMPVSHTHY NLRQVSDKLS  420
SQASTSGVLN KFPSSGPMII SAGSDADNFG VSNGIFQGSQ FLNPKDRLSC DGGTTIDLLQ  480
LSSELQRVED QRQSLQVKKE NDAFCCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-50	SBP family protein