PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0183471

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 382aa MW: 42038 Da PI: 8.7671

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0183471	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.3	1.4e-40	16	92	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ k+yh+rhkv e+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q RcHm_v2.0_Chr7g0183471 16 CQVYGCNKDLSSSKDYHKRHKVWEAHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQV 92 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MYHSFFIGVY SPTAYCQVYG CNKDLSSSKD YHKRHKVWEA HSKTAKVIVK GIEQRFCQQC 60 SRFHLLAEFD DGKRSCRKRL AGHNERRRKP QVRIHSGRDG RLLQSYSGSS FPGTMFTAAS 120 FVCQDILPSS ILDAENYRTS DCRRIKVEGG TQQRPLSGVP VTNGHLHLKP VFSSYDNGKQ 180 YPPVHVNGTN NLPSGSILAE TGSQYPHELR SLNSGSCSIY HEVALGSEDF NDLHTTASTV 240 QGLSRIPDSG CALSLLSSQS QNSTSHSSGI PIARPLVMPV SHTHYNLRQV SDKLSSQAST 300 SGVLNKFPSS GPMIISAGSD ADNFGVSNGI FQGSQFLNPK DRRSCDGGTT IDLLQLSSEL 360 QRVEDQRQSL QVKKENDAFC CL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MYHSFFIGVY SPTAYCQVYG CNKDLSSSKD YHKRHKVWEA HSKTAKVIVK GIEQRFCQQC  60
SRFHLLAEFD DGKRSCRKRL AGHNERRRKP QVRIHSGRDG RLLQSYSGSS FPGTMFTAAS  120
FVCQDILPSS ILDAENYRTS DCRRIKVEGG TQQRPLSGVP VTNGHLHLKP VFSSYDNGKQ  180
YPPVHVNGTN NLPSGSILAE TGSQYPHELR SLNSGSCSIY HEVALGSEDF NDLHTTASTV  240
QGLSRIPDSG CALSLLSSQS QNSTSHSSGI PIARPLVMPV SHTHYNLRQV SDKLSSQAST  300
SGVLNKFPSS GPMIISAGSD ADNFGVSNGI FQGSQFLNPK DRRSCDGGTT IDLLQLSSEL  360
QRVEDQRQSL QVKKENDAFC CL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-45	SBP family protein