PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0183231

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 384aa MW: 42654.5 Da PI: 9.2887

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0183231	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	93.7	3.9e-29	60	173	3	92
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsss 87 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl+ + i++l+ ++ +++ +++s + + +++++ RcHm_v2.0_Chr7g0183231 60 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEVTEDDIDKLPPLQLLPHHGLlnTTSSAHHQFHHHQQ 146 78*************************************************************555554443211122222222222 PP TCP 88 g......................kaak 92 + +++k RcHm_v2.0_Chr7g0183231 147 QilnplnvpffdvnqrlteqvvlDESK 173 234444444555544444444442222 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MMTNPRGKGF QAKQEGQNNN NNDGNIMTSY NKAASSSTTT SRQWSGFRNP RIVRVSRTFG 60 GKDRHSKVST VRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVIDWLLE VTEDDIDKLP 120 PLQLLPHHGL LNTTSSAHHQ FHHHQQQILN PLNVPFFDVN QRLTEQVVLD ESKGKSIKAN 180 DHQRDHDDEA LAQKLFPIGN MPSSIPGLLN NAMAYNNYFH HHSSEPSSLS LSQFGSSHGF 240 PLMPQMDHMM SSNNGLSFST TSMPMASGSQ LFFCPSTATP VPSLFGPYAP YITTTTPVVE 300 NSSTSNDRQP ELRRTNNHMI QLLSSSSTTS TTLQNFEPNN ALMPSLQYSI GSSLRSFPTL 360 VNPKLHSQNN DGSSSQPDKD RTGS

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MMTNPRGKGF QAKQEGQNNN NNDGNIMTSY NKAASSSTTT SRQWSGFRNP RIVRVSRTFG  60
GKDRHSKVST VRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVIDWLLE VTEDDIDKLP  120
PLQLLPHHGL LNTTSSAHHQ FHHHQQQILN PLNVPFFDVN QRLTEQVVLD ESKGKSIKAN  180
DHQRDHDDEA LAQKLFPIGN MPSSIPGLLN NAMAYNNYFH HHSSEPSSLS LSQFGSSHGF  240
PLMPQMDHMM SSNNGLSFST TSMPMASGSQ LFFCPSTATP VPSLFGPYAP YITTTTPVVE  300
NSSTSNDRQP ELRRTNNHMI QLLSSSSTTS TTLQNFEPNN ALMPSLQYSI GSSLRSFPTL  360
VNPKLHSQNN DGSSSQPDKD RTGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	6e-43	TCP family protein