PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0182471

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 139aa MW: 15688.8 Da PI: 6.7659

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0182471	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.4	3.5e-15	39	132	1	93
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-....TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvlt....kGWkeFvkangLkegDfvv 81 f+ + +++++l++ + ++ +fa++h s +l+l++++ r+W li+ + ++ v++ +GWk F ++n+L+egD++v RcHm_v2.0_Chr7g0182471 39 FIMIKMTAYYLRRE-MFISASFATKHlcR--AGASCDLSLQTPDMRTWIADLIVYETTESRVFAkikgAGWKAFKEENHLEEGDVCV 122 55667899999998.9********662..445679***********8855555544444777*************** PP EEE-SSSEE..E CS B3 82 Fkldgrsefelv 93 ++l+++ +f + RcHm_v2.0_Chr7g0182471 123 LELIEECKF--R 132 **98777..4 PP

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence
MPNAYLKAAR AISNSSGSSG NEHQNVLSTA NSFKSDKPFI MIKMTAYYLR REMFISASFA 60 TKHLCRAGAS CDLSLQTPDM RTWIADLIVY ETTESRVFAK IKGAGWKAFK EENHLEEGDV 120 CVLELIEECK FRVSYSEQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-09	B3 family protein