PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0182451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 536aa    MW: 61144.2 Da    PI: 7.722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0182451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.6e-11931721697
                             EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                      B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                               lp + ++++ +  +    + le ++  + W+++l+ + ++gr++l kGW+eF++   L+eg f vF+++g+ s f   v+vf
  RcHm_v2.0_Chr7g0182451  93 KELPEPAVRKYRNCMAD--HIFLEVPNCeKPWKLNLRRSARGGRMWLNKGWQEFANFYSLDEGYFAVFSYEGEhSHF--QVRVF 172
                             66888888888544333..477887554499*****88888889***************************987777..88877 PP
2B343.55.6e-14248340999
                             HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-...TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvlt...kGWkeFvkangLkegDfvvFkldgrsefe 91 
                             ++ +++   + ++fa+eh   + +s ++tl+ +  r+W+  ++ + ++++ ++ +   +GWk F ++n+L  g ++vF+l+++++f 
  RcHm_v2.0_Chr7g0182451 248 SYIQLCFAHINRSFAKEHLCRPGTSCDVTLQISGERVWTAVCTATEHRDQkIYTRfsgAGWKAFQQDNHLVKGNICVFELIEERTF- 333
                             5667788899********666778889***************9977776653333555**********************987777. PP

                             .EEEEE-S CS
                      B3  92 lvvkvfrk 99 
                              +v++fr+
  RcHm_v2.0_Chr7g0182451 334 -KVSIFRT 340
                             .****997 PP
3B345.21.7e-14421515698
                             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             +++ ++++++  ++ +fa+eh  k+  s  ++l++++ r+W+ ++ ++ +s +     + + GWk F ++n+L  gD++vF+l++  
  RcHm_v2.0_Chr7g0182451 421 MTATYMRLSLAHISASFAAEHLCKPGISCNVILQNSEERVWTAQCFVSEHSHHrvqaSLSGPGWKAFKQDNHLVLGDVCVFELID-- 505
                             567777788889*********777889999***************88555555455567779********************997.. PP

                             EE..EEEEE- CS
                      B3  89 efelvvkvfr 98 
                             e++l+v++f+
  RcHm_v2.0_Chr7g0182451 506 ERKLKVSIFQ 515
                             5667999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MWLLKGWQEF ANFYSLDQGC FPVFSYEGKQ SHFQVRIFHW KCMEMDYPIR RRGTFSRAMA  60
SSGKRDGKGP AFPEDYPSFF LNIVTDDDLL DGKELPEPAV RKYRNCMADH IFLEVPNCEK  120
PWKLNLRRSA RGGRMWLNKG WQEFANFYSL DEGYFAVFSY EGEHSHFQVR VFQWNDMELE  180
YPIHGGGVDG RPKRKKTGAN QDMPPAHLET RAASISSGSS ADEHQNDLTA TASFKSNKPF  240
FMLNICASYI QLCFAHINRS FAKEHLCRPG TSCDVTLQIS GERVWTAVCT ATEHRDQKIY  300
TRFSGAGWKA FQQDNHLVKG NICVFELIEE RTFKVSIFRT KVKINRQAEE KDMEIDYPIH  360
GGGIDVTLKG KKPGANQEVP PAHLEARANS VSSGSSADED QNNLLTTTSF KSDKPIFMLN  420
MTATYMRLSL AHISASFAAE HLCKPGISCN VILQNSEERV WTAQCFVSEH SHHRVQASLS  480
GPGWKAFKQD NHLVLGDVCV FELIDERKLK VSIFQGKVKI IRQNEENEAR HISQFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.17e-12B3 family protein