PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0182341

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 363aa MW: 40659 Da PI: 8.2701

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0182341	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.5	6.8e-15	192	237	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ L++l+P+a K +Ka++L ++++Y+ +Lq RcHm_v2.0_Chr7g0182341 192 HNQSERKRRDRINQKMKALQRLVPNA-----DKTDKASMLDEVIKYLEQLQ 237 9**********************9.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MQQQHQNNPN ITHLVPMSNY DVAELKLENG HLAIHGLGGI VPTALEKATW SNKACDTLES 60 IVHQATCHKV PKTNLSSMVA SSGGTWTEDS GQQPLENSWI RNCTRSDSDY HGKNVSSTST 120 TSNVHEEQTE YQRDNDTTLN TWVSFESARS KSNDDDSTCH EGLENQDKGR KTAKGNESSR 180 SRSRSRRVAA IHNQSERKRR DRINQKMKAL QRLVPNADKT DKASMLDEVI KYLEQLQAQV 240 QMMNSMRNNM HPHMNMMMPL GMQQQQHLHQ MSVLARMGMT PVVPGSLGMG MLDVSNMARI 300 APHQSLQQPL IHPTPASFLP PFMVPQLMPP KPDPATSANF ADPYHALLAQ VCLIIKHGFE 360 QLK

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MQQQHQNNPN ITHLVPMSNY DVAELKLENG HLAIHGLGGI VPTALEKATW SNKACDTLES  60
IVHQATCHKV PKTNLSSMVA SSGGTWTEDS GQQPLENSWI RNCTRSDSDY HGKNVSSTST  120
TSNVHEEQTE YQRDNDTTLN TWVSFESARS KSNDDDSTCH EGLENQDKGR KTAKGNESSR  180
SRSRSRRVAA IHNQSERKRR DRINQKMKAL QRLVPNADKT DKASMLDEVI KYLEQLQAQV  240
QMMNSMRNNM HPHMNMMMPL GMQQQQHLHQ MSVLARMGMT PVVPGSLGMG MLDVSNMARI  300
APHQSLQQPL IHPTPASFLP PFMVPQLMPP KPDPATSANF ADPYHALLAQ VCLIIKHGFE  360
QLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	201	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-35	bHLH family protein