PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0181821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35122.5 Da PI: 9.7265 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.4e-18 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l ++q+G g+W++ +++ g+ R++k+c++rw++yl RcHm_v2.0_Chr7g0181821 19 RGPWTPQEDKKLFAFIQQHGHGSWRSLPEKAGLQRCGKSCRLRWRNYL 66 89*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed+ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l RcHm_v2.0_Chr7g0181821 72 RGNFSLQEDQTIIQLHALLGNR-WSAIAANLP-RRTDNEIKNYWNTHL 117 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence |
MGKSRTLTNS TATTSEIKRG PWTPQEDKKL FAFIQQHGHG SWRSLPEKAG LQRCGKSCRL 60 RWRNYLNPAI KRGNFSLQED QTIIQLHALL GNRWSAIAAN LPRRTDNEIK NYWNTHLKKR 120 LAKIGFDPVT HRPKTAILAS ANGDQKNLSN LSHIAQWESA RLQAEARFVR QSKLLKPAPQ 180 CLDFNLRTWE TLMMSKSLAA GGGGGDEAGG VGRATNVVQE VGSFGNFYGV LRNNGRQFEA 240 PKLTKSAAPD FNGVSEESGT DEYGDLFETL LPQESYNNTG FDVVDAWTLE QCNDISADYQ 300 NVIMSGGLKN PFMFQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 3e-89 | MYB family protein |