PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0181601
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 374aa    MW: 42032.2 Da    PI: 6.7369
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0181601genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.31.7e-221053245
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            + e++ nrqvt+skRrngilKKA+ELS+LCd+++ +++fs+ g+
  RcHm_v2.0_Chr7g0181601 10 KLESSGNRQVTYSKRRNGILKKAKELSILCDVDITLLMFSPAGR 53
                            67999************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MGRVKLKIKK LESSGNRQVT YSKRRNGILK KAKELSILCD VDITLLMFSP AGRPTLFQGE  60
RSNFEDIIAK FAHLTPQERV KRKLESLEVL KKTFKKLDHD VNVQEFVGSS TQTVENLTNQ  120
ARALQTQLTE LHKRLSFWSN PEKVDDVEQL RQMEDMLKES ISRTHLHKEN FEKHQLASLN  180
CTGQFQNGMP SSLIVGSVHE TQPMPWILNN DNQHLILPNE ASFLPHRDVD CSTNASVARF  240
NSYFGSGAST STSTGKQSEV GDPGQLDNMG HIPSMEGGCG LNEYDINACL STELGQQYAY  300
PSYCNPNVPD DKKLKPGVEM NLPTNSVDYQ ASSNFELSRS LYGDEHPSWL SSSGPSTIAV  360
YDQNTYQQQP NMRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-97M-type_MADS family protein