PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0180571

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HD-ZIP

Protein Properties

Length: 326aa MW: 36847.5 Da PI: 4.3873

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0180571	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.4e-19	91	144	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k RcHm_v2.0_Chr7g0180571 91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWK 144 56689************************************************9 PP
2	HD-ZIP_I/II	127.7	5e-41	91	182	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kkrrl+++qv++LE+sF+ e+kLeperK la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L++ y++lk++ +++ ke+++L+ RcHm_v2.0_Chr7g0180571 91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQADYNSLKADCDSICKENDKLK 177 9************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 +e+ + RcHm_v2.0_Chr7g0180571 178 AEVVQ 182 99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MAGGGRVYSS SGGASFLLQN QRGSCAPEPL DSLFLSGSSN VSSTSPFLGS SMMSFEGVRR 60 GNGLKRSAFQ QYEHEDNCDE EFDEYFHQPG KKRRLTADQV QFLEKSFDLE NKLEPERKIL 120 LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DYDVLQADYN SLKADCDSIC KENDKLKAEV 180 VQLSDRLRLK DEEMANSEQS DTNKSNQEPQ QMPIAESVSS EGEVSKLSVV ACKEDLTSVK 240 SDIFDSDSSH YTDGVHSSLL ERGDSSYIFE PDQSDLSQDE EDNLSKTLLP PYIFPKLEDV 300 DYTDPPANSC NFGFPVEDHA FWSWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-44	HD-ZIP family protein