PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0179221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 279aa MW: 31659.7 Da PI: 7.7603 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.6 | 4.1e-17 | 187 | 278 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 6 tpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 +++++l+ ++l++p f+ eh ++ + ++tl+++ r+W+v ++++k+++ + ++GW+ Fv++n+L++gD ++F+l+g+ RcHm_v2.0_Chr7g0179221 187 MTESYLS-AILRVPSYFTIEHlcEIG--SYSDVTLQTSGERTWTVHCTIDKSRRNgRFNAAGWRAFVQDNQLEAGDDCLFQLIGE-- 268 4444444.469**********87333..4458***************99777776677889**********************94.. PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+v v+r+ RcHm_v2.0_Chr7g0179221 269 RKLKVYVYRA 278 5568888875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence |
MATMSRPMAS RSKREGRGHA FPVDSPSFCL KIVTAVDLQD GKELPEPAVR KYGNCMADSI 60 FLKVPNCGTS WPIELKKTIR GSRIWLQKGW EQFTDFYSID QDYFIVFSYE GEHSHFQVHI 120 FHCNNMEMDY PIRGGGAGGC MSTPNLKGSS FPSASSVGRD QNNDNQHDFY GANNFIFGDK 180 PSFRITMTES YLSAILRVPS YFTIEHLCEI GSYSDVTLQT SGERTWTVHC TIDKSRRNGR 240 FNAAGWRAFV QDNQLEAGDD CLFQLIGERK LKVYVYRAK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-15 | B3 family protein |