PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0178011

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-X1

Protein Properties

Length: 1219aa MW: 131179 Da PI: 8.1465

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0178011	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	22.9	1.9e-07	406	424	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC+pC+ RcHm_v2.0_Chr7g0178011 406 CGRHRCERKCHVGPCDPCQ 424 ******************6 PP
2	zf-NF-X1	19.4	2.3e-06	470	487	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+++CH+GpC++C RcHm_v2.0_Chr7g0178011 470 CGNHVCSEICHPGPCGEC 487 ****************** PP
3	zf-NF-X1	22.2	3e-07	528	545	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+Cq+ CH+G+CppC RcHm_v2.0_Chr7g0178011 528 CGVHQCQQVCHTGDCPPC 545 ****************** PP
4	zf-NF-X1	17.2	1.1e-05	624	641	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC RcHm_v2.0_Chr7g0178011 624 CGQHSCESLCHSGHCPPC 641 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1219 aa Download sequence
MASQVRSERR ENNNRSRNPA QPRWVPRGSN PTPAAAAAVN PPSFGSNLPD GNAGMPNNSS 60 EAGEGRQHRG GHGGNGGQQN HISAPAESRQ HRGGYSGNGG QLNYVLAAPS ESRQHRGGHN 120 GNGGQSNYSF TASDGRQQRG GHNASVGQFS HSSATSESRL HRGGHNGNGG QSNHSFTLSE 180 NRQHRGGHNG SRGNVLRPMN HRREGERSES QEGMGMKDSS LPQLVQEIQD KLTKGTVECM 240 ICYDMVRRSA PVWSCSSCFS IFHLNCIKKW ARAPTSIDMS AGKNQGFNWR CPGCQSVQLT 300 SSKEIRYMCF CGKRTDPPSD LYLTPHSCGE HCGKPLEKEV PGKGMSKDDL CPHMCVLQCH 360 PGPCPPCKAF APPRLCPCGK KTITTRCSDR TSVLTCGNLC SKLLDCGRHR CERKCHVGPC 420 DPCQVPFNAS CFCLKKLEVV LCGEMIVKGE VKAEDGVFSC SSSCGKKLSC GNHVCSEICH 480 PGPCGECILM PRNIKTCHCG KTSLQEERQS CLDPIPTCSQ ICDKTLPCGV HQCQQVCHTG 540 DCPPCLVKVT QKCRCESTSR NVECCKTTME NEKFTCDKPC GRKKNCGRHR CSERCCPLSN 600 SNNHLSGDWD PHLCSMPCGK KLRCGQHSCE SLCHSGHCPP CLDTIFTDLT CACGRTSIPP 660 PLPCGTPPPS CQLPCSVPQP CGHSSSHSCH FGDCPPCSVP VAKECIGGHV VLRNIPCGSR 720 DIKCNKLCGK MRQCGMHACG RTCHPPPCEC SSSAEAGSKS SCGQKCGAPR RDCRHTCTAP 780 CHPYASCPDA RCDFLVTITC SCGRITANVP CDSGGSSASF NADTVFEASI IQKLPVPLQP 840 VEATNKKIPL GQRKLMCDDE CAKLERKRVL ADAFDIVPPN LDALHFGETT VMSELLSDLF 900 RRDPKWVLSV EERCKQLVLG KSKGATSGLR VHVFCPMLKE KRDVVRVIAD RWKLAVQAAG 960 WEPKRFIVVH ATPKSKVPAR VLGVKGTTTV NASQPPAFDH LVDMDPRLVV SFPDLPRDAD 1020 ISALVLRFGG ECELVWLNDK NALAVFNDPA RAATAMRRLD NGTLYHGAIA VLSAASAGSN 1080 AWGGGGIAKE GAYTALKGNA WKKAVIRESS WREDSWGEEE WSGGSADVQA SVWKKEAPIA 1140 ASLNRWSVLD SEVALGSSSV SPTVEDSGKQ TAARLISMVE SNASGSTSSN ASGSTSAGQL 1200 GGTITETSEV VDDWEKAYE

Sequence ? help Back to Top

Protein Sequence Length: 1219 aa Download sequence

MASQVRSERR ENNNRSRNPA QPRWVPRGSN PTPAAAAAVN PPSFGSNLPD GNAGMPNNSS  60
EAGEGRQHRG GHGGNGGQQN HISAPAESRQ HRGGYSGNGG QLNYVLAAPS ESRQHRGGHN  120
GNGGQSNYSF TASDGRQQRG GHNASVGQFS HSSATSESRL HRGGHNGNGG QSNHSFTLSE  180
NRQHRGGHNG SRGNVLRPMN HRREGERSES QEGMGMKDSS LPQLVQEIQD KLTKGTVECM  240
ICYDMVRRSA PVWSCSSCFS IFHLNCIKKW ARAPTSIDMS AGKNQGFNWR CPGCQSVQLT  300
SSKEIRYMCF CGKRTDPPSD LYLTPHSCGE HCGKPLEKEV PGKGMSKDDL CPHMCVLQCH  360
PGPCPPCKAF APPRLCPCGK KTITTRCSDR TSVLTCGNLC SKLLDCGRHR CERKCHVGPC  420
DPCQVPFNAS CFCLKKLEVV LCGEMIVKGE VKAEDGVFSC SSSCGKKLSC GNHVCSEICH  480
PGPCGECILM PRNIKTCHCG KTSLQEERQS CLDPIPTCSQ ICDKTLPCGV HQCQQVCHTG  540
DCPPCLVKVT QKCRCESTSR NVECCKTTME NEKFTCDKPC GRKKNCGRHR CSERCCPLSN  600
SNNHLSGDWD PHLCSMPCGK KLRCGQHSCE SLCHSGHCPP CLDTIFTDLT CACGRTSIPP  660
PLPCGTPPPS CQLPCSVPQP CGHSSSHSCH FGDCPPCSVP VAKECIGGHV VLRNIPCGSR  720
DIKCNKLCGK MRQCGMHACG RTCHPPPCEC SSSAEAGSKS SCGQKCGAPR RDCRHTCTAP  780
CHPYASCPDA RCDFLVTITC SCGRITANVP CDSGGSSASF NADTVFEASI IQKLPVPLQP  840
VEATNKKIPL GQRKLMCDDE CAKLERKRVL ADAFDIVPPN LDALHFGETT VMSELLSDLF  900
RRDPKWVLSV EERCKQLVLG KSKGATSGLR VHVFCPMLKE KRDVVRVIAD RWKLAVQAAG  960
WEPKRFIVVH ATPKSKVPAR VLGVKGTTTV NASQPPAFDH LVDMDPRLVV SFPDLPRDAD  1020
ISALVLRFGG ECELVWLNDK NALAVFNDPA RAATAMRRLD NGTLYHGAIA VLSAASAGSN  1080
AWGGGGIAKE GAYTALKGNA WKKAVIRESS WREDSWGEEE WSGGSADVQA SVWKKEAPIA  1140
ASLNRWSVLD SEVALGSSSV SPTVEDSGKQ TAARLISMVE SNASGSTSSN ASGSTSAGQL  1200
GGTITETSEV VDDWEKAYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein