PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr7g0177521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 713aa MW: 78712.4 Da PI: 6.8707 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 8e-20 | 24 | 79 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le +F+ +++p++++r +L+++lgL rq+k+WFqNrR+++k RcHm_v2.0_Chr7g0177521 24 KKRYHRHTANQIQRLEGMFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 79 678899***********************************************998 PP | |||||||
2 | START | 179.3 | 2.2e-56 | 223 | 447 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdet 75 +a a++el+++ + ++p+W+kss + +n + + ++f+++ + ++ea+rasgvv+m+ lv l+d+++ + + RcHm_v2.0_Chr7g0177521 223 IAANAMEELLRLLQTNDPLWMKSStdgrDVLNLESYERIFPRATThlknpnLRIEASRASGVVIMNGLALVDMLMDSNKfgeLFPTI 309 67889********************999999999999***99888*********************************777777777 PP -SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS START 76 lakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155 + a t+evissg g lqlm+ elq+lsplvp R+f+f+Ry+ q ++g w+ivdvS d +++++ + R+++lpSg+li+ RcHm_v2.0_Chr7g0177521 310 VSMARTIEVISSGmlgshsGSLQLMYKELQVLSPLVPtREFYFLRYCHQIEQGHWAIVDVSYDFPRDNQ-FTNQCRSHRLPSGCLIQ 395 77******************************************************************9.7999************* PP EECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 156 pksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++ng+skv wvehv+ +++ p h l+r l++sg+a+ga +w+ lqr ce+ RcHm_v2.0_Chr7g0177521 396 DMPNGYSKVNWVEHVEIEEKAPiHRLYRDLIHSGQAFGAERWLVVLQRMCER 447 **************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 713 aa Download sequence |
MEFGSGAGGG SGGDHDASDS QRRKKRYHRH TANQIQRLEG MFKDCPHPDE KQRLQLSREL 60 GLAPRQIKFW FQNRRTQMKA QHERADNSAL RSENDKIRCE NIAIREALKN VICPSCGVPP 120 INEDNYFDEH KLRMENAQLK EELDRVSSIA AKYIGRPISQ LPPVQPIHIS PLDLSMASFG 180 GHGMGGPSLD LDLLTGSTSS TIPSLPYQPM GISDMDKSLM TDIAANAMEE LLRLLQTNDP 240 LWMKSSTDGR DVLNLESYER IFPRATTHLK NPNLRIEASR ASGVVIMNGL ALVDMLMDSN 300 KFGELFPTIV SMARTIEVIS SGMLGSHSGS LQLMYKELQV LSPLVPTREF YFLRYCHQIE 360 QGHWAIVDVS YDFPRDNQFT NQCRSHRLPS GCLIQDMPNG YSKVNWVEHV EIEEKAPIHR 420 LYRDLIHSGQ AFGAERWLVV LQRMCERFAC LMVSGTSTRD LEGVIPSPEG KRSMMKLAQR 480 MVNNFCASIS TSNGHRWTTI SGMNEVGVRV TIHKSTDPGK PNGVVLSAAT TIWLPLSPQT 540 VFNFFKDERT RPQWDVLSNG NAVQEVAHIA NGSHPGNCIS VLRAFNTSQN NMLILQESCI 600 DSSGSVVVYC PVDLPAINIA MSGEDPSYIP LLPSGFTISP DGPQDQGDTS ASTSSCSNVN 660 HIGGGGSLIT VAFQILVSSL PSAKLNMESV NTVNNLIGTT VQQIKSALNC SGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | HD-ZIP family protein |