PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0177521
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 713aa    MW: 78712.4 Da    PI: 6.8707
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0177521genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.28e-202479156
                            TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            +++ +++t++q+++Le +F+ +++p++++r +L+++lgL  rq+k+WFqNrR+++k
  RcHm_v2.0_Chr7g0177521 24 KKRYHRHTANQIQRLEGMFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 79
                            678899***********************************************998 PP

2START179.32.2e-562234472206
                             HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT CS
                   START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdet 75 
                             +a  a++el+++ + ++p+W+kss    + +n + + ++f+++ +       ++ea+rasgvv+m+   lv  l+d+++    + + 
  RcHm_v2.0_Chr7g0177521 223 IAANAMEELLRLLQTNDPLWMKSStdgrDVLNLESYERIFPRATThlknpnLRIEASRASGVVIMNGLALVDMLMDSNKfgeLFPTI 309
                             67889********************999999999999***99888*********************************777777777 PP

                             -SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS
                   START  76 lakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155
                             +  a t+evissg      g lqlm+ elq+lsplvp R+f+f+Ry+ q ++g w+ivdvS d +++++   +  R+++lpSg+li+
  RcHm_v2.0_Chr7g0177521 310 VSMARTIEVISSGmlgshsGSLQLMYKELQVLSPLVPtREFYFLRYCHQIEQGHWAIVDVSYDFPRDNQ-FTNQCRSHRLPSGCLIQ 395
                             77******************************************************************9.7999************* PP

                             EECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 156 pksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                             +++ng+skv wvehv+ +++ p h l+r l++sg+a+ga +w+  lqr ce+
  RcHm_v2.0_Chr7g0177521 396 DMPNGYSKVNWVEHVEIEEKAPiHRLYRDLIHSGQAFGAERWLVVLQRMCER 447
                             **************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    
MEFGSGAGGG SGGDHDASDS QRRKKRYHRH TANQIQRLEG MFKDCPHPDE KQRLQLSREL  60
GLAPRQIKFW FQNRRTQMKA QHERADNSAL RSENDKIRCE NIAIREALKN VICPSCGVPP  120
INEDNYFDEH KLRMENAQLK EELDRVSSIA AKYIGRPISQ LPPVQPIHIS PLDLSMASFG  180
GHGMGGPSLD LDLLTGSTSS TIPSLPYQPM GISDMDKSLM TDIAANAMEE LLRLLQTNDP  240
LWMKSSTDGR DVLNLESYER IFPRATTHLK NPNLRIEASR ASGVVIMNGL ALVDMLMDSN  300
KFGELFPTIV SMARTIEVIS SGMLGSHSGS LQLMYKELQV LSPLVPTREF YFLRYCHQIE  360
QGHWAIVDVS YDFPRDNQFT NQCRSHRLPS GCLIQDMPNG YSKVNWVEHV EIEEKAPIHR  420
LYRDLIHSGQ AFGAERWLVV LQRMCERFAC LMVSGTSTRD LEGVIPSPEG KRSMMKLAQR  480
MVNNFCASIS TSNGHRWTTI SGMNEVGVRV TIHKSTDPGK PNGVVLSAAT TIWLPLSPQT  540
VFNFFKDERT RPQWDVLSNG NAVQEVAHIA NGSHPGNCIS VLRAFNTSQN NMLILQESCI  600
DSSGSVVVYC PVDLPAINIA MSGEDPSYIP LLPSGFTISP DGPQDQGDTS ASTSSCSNVN  660
HIGGGGSLIT VAFQILVSSL PSAKLNMESV NTVNNLIGTT VQQIKSALNC SGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein