PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0311751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 563aa MW: 64071.2 Da PI: 6.3234

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0311751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99.5	2.7e-31	375	459	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev aLi +r+++e+++++ lk+plWe+vs+ m + g++rs+k+Ckekwen+nk+++k+k++ kkr +++s+tc+yf++l+ RcHm_v2.0_Chr6g0311751 375 RWPQSEVEALILVRSNIESKFQEPGLKGPLWEQVSASMDSLGYQRSAKRCKEKWENINKYFRKTKDSPKKR-PQQSKTCSYFNKLD 459 8*******************************************************************8.99999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MQSNFEIADL PSQQHFMDTN SSSPVLPIFF TPQNQNHPSF HRQLEHQQLG HHHLVHPTPI 60 THELFQGLHP QPEQEQSGTL HWQMSPINFK LGLNENSASG EVALLDENSP LFLQSRPQNL 120 GFKSWQPQEF CTRKEPFWKP HETQGMKQKQ ATEGEICKEL ESKYRLYGEL EAIYSLGKIG 180 EVNNKQTGSG SALTNENSPK NVDLVPVPFG GSHGLNGGPA ATAGVDDGSE ASIDEEVSYR 240 KVQKRKRKRR MKEQLSSSTT RFFEGLVKRV MDHQESLHHK YLALIEKMDR ERREREAAWR 300 LQEAEKHKRK AIAQLHEQAL ASKRESLIVS YIEKITGQKV NIPSRETPSL LQCDYSNGAM 360 EEELTPVKVD QTNSRWPQSE VEALILVRSN IESKFQEPGL KGPLWEQVSA SMDSLGYQRS 420 AKRCKEKWEN INKYFRKTKD SPKKRPQQSK TCSYFNKLDQ LYSRTPVTNP SSSSYCSSNP 480 VVSIERQGYS ELLQAVLDGS ETQNLSSGNF EILSEIGSNR LDFDGITNGK VEHLREDHGK 540 EKENHEDDGS MEEEDIDGND SDE

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MQSNFEIADL PSQQHFMDTN SSSPVLPIFF TPQNQNHPSF HRQLEHQQLG HHHLVHPTPI  60
THELFQGLHP QPEQEQSGTL HWQMSPINFK LGLNENSASG EVALLDENSP LFLQSRPQNL  120
GFKSWQPQEF CTRKEPFWKP HETQGMKQKQ ATEGEICKEL ESKYRLYGEL EAIYSLGKIG  180
EVNNKQTGSG SALTNENSPK NVDLVPVPFG GSHGLNGGPA ATAGVDDGSE ASIDEEVSYR  240
KVQKRKRKRR MKEQLSSSTT RFFEGLVKRV MDHQESLHHK YLALIEKMDR ERREREAAWR  300
LQEAEKHKRK AIAQLHEQAL ASKRESLIVS YIEKITGQKV NIPSRETPSL LQCDYSNGAM  360
EEELTPVKVD QTNSRWPQSE VEALILVRSN IESKFQEPGL KGPLWEQVSA SMDSLGYQRS  420
AKRCKEKWEN INKYFRKTKD SPKKRPQQSK TCSYFNKLDQ LYSRTPVTNP SSSSYCSSNP  480
VVSIERQGYS ELLQAVLDGS ETQNLSSGNF EILSEIGSNR LDFDGITNGK VEHLREDHGK  540
EKENHEDDGS MEEEDIDGND SDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	250	KRKRKRR
2	244	251	KRKRKRRM
3	245	250	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-41	Trihelix family protein