PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0311151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HSF | ||||||||
Protein Properties | Length: 375aa MW: 41853.8 Da PI: 4.6133 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.3 | 1.4e-34 | 41 | 132 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k++e++ed++++ ++sws+ nsf+v+d+++f++ +Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++ weF+++ F RcHm_v2.0_Chr6g0311151 41 FLTKTFEMVEDSSTDAIVSWSRARNSFIVWDSHQFSSILLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLG 118 9****************************************************************999.........********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+++ll++ikr+++ RcHm_v2.0_Chr6g0311151 119 GQRHLLKTIKRRRH 132 ***********975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence |
MEGVAVKEEM IACTVGSSSS SSSSLSPRPM EGLHELGPPP FLTKTFEMVE DSSTDAIVSW 60 SRARNSFIVW DSHQFSSILL PRYFKHNNFS SFIRQLNTYG FRKVDPDRWE FANEGFLGGQ 120 RHLLKTIKRR RHVSQSTHEG GGGACVELGQ YGLETELERL KRDRNVLRTE IVRLRQQQQN 180 SKELVIAMED RLQTTEKKQQ QIMNFLAKAL KNPSFIQNFA QKRELVGVGV GVEIGRKRRL 240 TASPSVENLQ EVPTAHVLDM AASQDQGELL TMESDFESLF SAAALDNESS SDINGSNLTS 300 IPTSGGGKLG AVNETIWDHL WSDELIGGNP EEEVVVGNDS EIDVEVEDLV ADPSEWGEDL 360 QDLVDQMDFL IKPNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | LKTIKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-118 | HSF family protein |