PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0310351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 266aa    MW: 29453 Da    PI: 6.2375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0310351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-151462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            rg W++eEde l+ + + +G+g +W   +++ g++R++k+c++rw++yl
  RcHm_v2.0_Chr6g0310351 14 RGQWSPEEDEALKTYLETHGTGgNWIHLPQKAGLRRCGKSCRLRWLNYL 62
                            89*********************************************97 PP
2Myb_DNA-binding50.64.3e-1669111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g +T+eEd ++ ++ +q+G++ W+ Ia+ m+ gRt++++k++w++
  RcHm_v2.0_Chr6g0310351  69 GGFTEEEDNIICNLYTQMGSR-WSYIAAQMP-GRTDNDVKNYWNT 111
                             569******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MGRAPCCDKA SVKRGQWSPE EDEALKTYLE THGTGGNWIH LPQKAGLRRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC NLYTQMGSRW SYIAAQMPGR TDNDVKNYWN TKLKKRFFSK  120
NPNASSLTLP CVPKLETNDE FQTQIPPTLM LSDYNSGLNA YDQSLSLKPN PLHNSKLTGL  180
SQFGASSVSM SQDGSSVSDS SSIAAVENGL LHGNSFINED AAGIPMDFGF GGLPYDVVNQ  240
MWFGEKANEV VHPTCSTGLD GDFFFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.12e-71MYB family protein