PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0310291
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28688.1 Da    PI: 7.3122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0310291genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-18107161256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ ++tkeq  +Le+ F+++ +++ +++ eLA++l+L  rqV vWFqNrRa+ k
  RcHm_v2.0_Chr6g0310291 107 RKKLRLTKEQSATLEDSFKQHTTLNPKQKIELARNLNLRPRQVEVWFQNRRARTK 161
                             78889************************************************98 PP
2HD-ZIP_I/II119.61.7e-38107194188
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rl+keq+++LE+sF+++++L+p++K elar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk++ ++lkeen+rL+ke +eL
  RcHm_v2.0_Chr6g0310291 107 RKKLRLTKEQSATLEDSFKQHTTLNPKQKIELARNLNLRPRQVEVWFQNRRARTKLKQTEADCELLKKCSETLKEENRRLHKELQEL 193
                             69************************************************************************************9 PP

             HD-ZIP_I/II  88 r 88 
                             +
  RcHm_v2.0_Chr6g0310291 194 Q 194
                             8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MGFDDITAEL GLSLGCHDKP ANHDHDHHQN QKKPHLKYDQ LLPSDLTLGP SDEAEPRGSN  60
SSSPSGAVSS FSNSSSFKRV DRDLLCSGEE VERVSEELYE DQAGSPRKKL RLTKEQSATL  120
EDSFKQHTTL NPKQKIELAR NLNLRPRQVE VWFQNRRART KLKQTEADCE LLKKCSETLK  180
EENRRLHKEL QELQLMKQTP TAPFYMQFPT ATLTVCPSCS ERIGNGTSTP IAGDHNHGIS  240
KPPLFNPFTH PSTAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156164RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.18e-62HD-ZIP family protein