PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0310091

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 657aa MW: 72366 Da PI: 7.3255

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0310091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50	7.2e-16	295	354	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g RcHm_v2.0_Chr6g0310091 295 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 354 78*****************988886678446***********************98 PP
2	AP2	50.6	4.9e-16	397	448	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g RcHm_v2.0_Chr6g0310091 397 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 448 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MKPINDHSHN NNGSHINSHN NNWLGFSLSA PHMKMEVTSS TDPHQHYSHQ QAQASSASAQ 60 LPSSFYNLTP LCYENGGFHS PLTVMPLKSD GSLCIMEALT RSQAEGMVPN SSPKLEDFLG 120 GASMGAHDYG THQREVAMAL SLDSLYYNEN AEAEQQYYSG IPFPGAYQTQ MEEESSKQAH 180 IVGSDSHQMT QNWVTRQYSA AHHALNQQHM SNNSLDNGGV SGSVNGGMQC GDLQSLTLSM 240 SPGSQSSCVT APRQISPTET ECLAMETKKR GSGKISQTKQ PVHRKSIDTF GQRTSQYRGV 300 TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV YLGGYDMEEK AARAYDLAAL KYWGSSTHIN 360 FPLDDYTTQI EEMKNMNRQE YVAHLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG 420 NKDLYLGTFG TQEEAAEAYD IAAIKFRGVN AVTNFDITRY DVEKIMASNT LLAGEFARRT 480 KEVEPNNQVI EYNSPAQNNV EANTPENSHG TSSDWKMALY QAAQQQQATA ATCVQTLDQK 540 SLSSGNYRSP ASFSMALQDL IRVESVNSSQ QLMDESAKAG AHFSNPSSLV TSLSSSREDS 600 PDKSGPTMLF AKPPMASKFI SPSTAAAVSS WFPSAQLRPA AAISMSHLPL FAAWSDT

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MKPINDHSHN NNGSHINSHN NNWLGFSLSA PHMKMEVTSS TDPHQHYSHQ QAQASSASAQ  60
LPSSFYNLTP LCYENGGFHS PLTVMPLKSD GSLCIMEALT RSQAEGMVPN SSPKLEDFLG  120
GASMGAHDYG THQREVAMAL SLDSLYYNEN AEAEQQYYSG IPFPGAYQTQ MEEESSKQAH  180
IVGSDSHQMT QNWVTRQYSA AHHALNQQHM SNNSLDNGGV SGSVNGGMQC GDLQSLTLSM  240
SPGSQSSCVT APRQISPTET ECLAMETKKR GSGKISQTKQ PVHRKSIDTF GQRTSQYRGV  300
TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV YLGGYDMEEK AARAYDLAAL KYWGSSTHIN  360
FPLDDYTTQI EEMKNMNRQE YVAHLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG  420
NKDLYLGTFG TQEEAAEAYD IAAIKFRGVN AVTNFDITRY DVEKIMASNT LLAGEFARRT  480
KEVEPNNQVI EYNSPAQNNV EANTPENSHG TSSDWKMALY QAAQQQQATA ATCVQTLDQK  540
SLSSGNYRSP ASFSMALQDL IRVESVNSSQ QLMDESAKAG AHFSNPSSLV TSLSSSREDS  600
PDKSGPTMLF AKPPMASKFI SPSTAAAVSS WFPSAQLRPA AAISMSHLPL FAAWSDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-155	AP2 family protein