PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0308491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 34939.6 Da PI: 9.9832 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.9 | 3.7e-32 | 249 | 307 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver+ +dp+++++tYeg+Hnh+ RcHm_v2.0_Chr6g0308491 249 ADEYSWRKYGQKPIKGSPHPRGYYKCSSQrGCPARKHVERAVDDPSMLIVTYEGDHNHS 307 69*************************999****************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence |
MAVDLMMGLV DSFAAKMEEN DVKEAASAGI QSVEKFISLM SSSSSTPESA AMEYKAVADM 60 AVNKFRKVIS LLDRGRTGHA RFRRGPVTTT SPQSPLVLTK ETEQSSFQFQ EALNTKTEQS 120 QSSSAFKVYC PKPVLRLPPL PKTSTSFHFS ATPAVSGSNS FMSGDGETTT LQHSVSSGFQ 180 LTNMSVSSAG KPPLPSSSLK RKCHSVDDAA ALRCGSSSSR CHCSKKRKSR VKRVTRIPAI 240 STKMADIPAD EYSWRKYGQK PIKGSPHPRG YYKCSSQRGC PARKHVERAV DDPSMLIVTY 300 EGDHNHSQAV TEAMAAIVLE SS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 3e-84 | WRKY family protein |