PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0308371
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 156aa    MW: 17640.6 Da    PI: 9.5993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0308371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-173584255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  RcHm_v2.0_Chr6g0308371 35 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 84
                            69*****99.**********9...336*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MEGEYSCSSS SSSSTTSLEK RKKRQHEHDD NQEKPYRGIR MRKWGKWVAE IREPNKRSRI  60
WLGSYTTPVA AARAYDTAVF YLRGPSARLN FPELVFQEGQ LHDMSSASIR KKATEVGAKV  120
DALQTALRSP SSQSKTGSQI KPDLNEYPDP ENSDDN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12046KRKKRQHEHDDNQEKPYRGIRMRKWGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.12e-54ERF family protein