PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0308241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23622.9 Da PI: 9.5084 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 20 | 63 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++++ f+ L llP++ K + +i+ +Av+YIksL+ RcHm_v2.0_Chr6g0308241 20 VERERRKKMKDMFSSLHALLPQL----PAKADHCTIVDEAVRYIKSLE 63 6*********************6....39*****************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MEKEVNESRK GQKAGGGAWV ERERRKKMKD MFSSLHALLP QLPAKADHCT IVDEAVRYIK 60 SLEHTLQTAQ KQRLTKLRSS ASTSITSKTE ARSDAGVTRK AFLADHFQEE EDRPSKKLAC 120 GNNPSPTSLD SQQASCFKTW FSPNIVVNIC GNEAHVSVCS PRRPGLLSTV FYILEKHKLD 180 VISAHISSDQ HRCMYMIHAH YVSPQNFLLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 8e-42 | bHLH family protein |