PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0307571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | B3 | ||||||||
Protein Properties | Length: 220aa MW: 25109.8 Da PI: 10.1129 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.1 | 5.8e-17 | 127 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k +++s+v+ +l lp +f++++ + +++ ++l de+g+++ + +++++ l++GW++F a++L +gD +vF+l++ RcHm_v2.0_Chr6g0307571 127 FVKPMLQSHVTGGFWLGLPLPFCRKYL-P-KRDAAVMLVDEEGEEYPTVY--LGNKNG--LSGGWRGFSIAHELVDGDALVFQLIRP 207 89************************5.3.36679***************..666666..9***********************997 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++f +v ++r RcHm_v2.0_Chr6g0307571 208 TTF--KVYIIR 216 777..888877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MAKPKTSYEE TRKQRMEENR KRMEALNLPQ LAQAFQTSSS PKPSPMKRQK PRKVEKQIVE 60 VRRSARVASQ PTPVYREVEV KVPRSYGRIS KHRDLSNRVY ASEYARAEAT EKAEELESGL 120 GSDYPTFVKP MLQSHVTGGF WLGLPLPFCR KYLPKRDAAV MLVDEEGEEY PTVYLGNKNG 180 LSGGWRGFSI AHELVDGDAL VFQLIRPTTF KVYIIRVESS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 6e-77 | B3 family protein |