PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0306551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92979.5 Da    PI: 6.2974
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0306551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192583357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  RcHm_v2.0_Chr6g0306551 25 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                            5679*****************************************************97 PP
2START182.52.4e-571693772205
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+s+g
  RcHm_v2.0_Chr6g0306551 169 IAEETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWFRNCRSVDVLNVLSTG 254
                             7899******************************************************.9999999999****************** PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h
  RcHm_v2.0_Chr6g0306551 255 ngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDH 341
                             ***************************************************9988899***************************** PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                             +dl+ ++++++lr+l++s++  ++kt++a+l+++++
  RcHm_v2.0_Chr6g0306551 342 MDLEPWSVPEVLRPLYESSTLLAQKTTMAALRNLRQ 377
                             ********************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    
MAVTSSSSCK ELGGGGMKMQ MDNGKYVRYT PEQVEALERL YHECPKPSSM RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY  120
ENSYFRQQTQ NTTLATTDTS CESVVTSGQH HLTPQHPPRD ASPAGLLSIA EETLAEFLSK  180
ATGTAVEWVQ LPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVSE ILKDRPSWFR  240
NCRSVDVLNV LSTGNGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVVCERSLN  300
NTQNGPSMPP VQNFVRAEML PSGYLIRPCE GGGSIIHIVD HMDLEPWSVP EVLRPLYESS  360
TLLAQKTTMA ALRNLRQISQ EVSQPNSNGW GRRPAALRAL SQRLSKGFNE AVNGFTDEGW  420
SILESDGVDD ITLLVNSSPG KMMGANLYAN GVPSMSNAVL CAKASMLLQN VPPAILLRFL  480
REHRSEWADR SIDAYSAAAI KAGPCGMLGS RAGSFGDQVI LPLAHTIEHE EFMEVIKIEN  540
MGHYRDDMMM PAADIFLLQL CSGVDENAVG TCAELVFAPI DASFSDDAPI LPSGFRIIPL  600
DSHMDAPSPN RTLDLASALE IGPTGNRSSG DNAGHCGNTK SVMTIAFQFA FEIHLQDNVA  660
SMARQYIRSI IAAVQRVALA LSPSRFGSHT GFRPPPGTPE AQTLAGWICQ SYRCYLGVEL  720
LKSEGSESIL KSLWHHSDAI LCCSLKALPV FTFANQAGLD MLETTLVALQ DITLEKIFDD  780
NGRKILFTEF PQIMQQGFMC LQGGICMSSM GRPISYERAV AWKVLNEEET AHCICFMFIN  840
WSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein