PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0305931

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 608aa MW: 66345.7 Da PI: 8.486

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0305931	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.8	2.6e-14	152	190	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k CnCk+s+Clk+YCeCfaag +C+ C+C +C+N+ + RcHm_v2.0_Chr6g0305931 152 KQKLCNCKNSRCLKLYCECFAAGIYCKG-CNCINCHNNVD 190 7899**********************.******986 PP
2	TCR	50.3	4.9e-16	233	271	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgC C+ks ClkkYCeCf+a++ Cse+CkC dCkN RcHm_v2.0_Chr6g0305931 233 KHHKGCACRKSGCLKKYCECFQANVLCSENCKCMDCKNF 271 589***********************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MEQSETVSGT APKKLARQLD FTAPVQPSVY SALPERSGPA AVQVQSQPQP HLRAHPQTQP 60 WSQPQLQLQS QSQPQQLHNS PAQLALQSQQ QGTVAQSPKP YLTQAVLHFQ ARPVGPTMPV 120 NGRIAHLPPK LGKHESPKPR ARSEAKESTP KKQKLCNCKN SRCLKLYCEC FAAGIYCKGC 180 NCINCHNNVD NEAARQDAVG AILERNPKAF RPKIASSPHE SRDSWEDAGE VQKHHKGCAC 240 RKSGCLKKYC ECFQANVLCS ENCKCMDCKN FDGSEERRAI FHEDHNTIAN MQQANAAISG 300 AIGSSGFGPL VSRQRPSDEL FSGIARDQSV HRITQAQQEN HLRPPMASSS LLSVPTFGTP 360 NTAVSGSSKP TYRSMLANII QPENIKDLCS RLVVVSGEAA KALAENRQKE MIDKTTTISA 420 TREGKESKRE QVQNLAHGDR LGMNQADRDG SSGSGSDGGD VQNSRPMSPG TLALMCDEQD 480 KMFMAAELPN GITTNSQSTT QNPSQEIGCT EVYEEQERVI LTGFRDFLNL LITRGSIKET 540 MCSPIAKRER EIQKDSVEGG TPKKPRCEKA TYSNDIGKSP ASTNGKVLQS VVTYVSEVGL 600 PLKNNTGQ

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MEQSETVSGT APKKLARQLD FTAPVQPSVY SALPERSGPA AVQVQSQPQP HLRAHPQTQP  60
WSQPQLQLQS QSQPQQLHNS PAQLALQSQQ QGTVAQSPKP YLTQAVLHFQ ARPVGPTMPV  120
NGRIAHLPPK LGKHESPKPR ARSEAKESTP KKQKLCNCKN SRCLKLYCEC FAAGIYCKGC  180
NCINCHNNVD NEAARQDAVG AILERNPKAF RPKIASSPHE SRDSWEDAGE VQKHHKGCAC  240
RKSGCLKKYC ECFQANVLCS ENCKCMDCKN FDGSEERRAI FHEDHNTIAN MQQANAAISG  300
AIGSSGFGPL VSRQRPSDEL FSGIARDQSV HRITQAQQEN HLRPPMASSS LLSVPTFGTP  360
NTAVSGSSKP TYRSMLANII QPENIKDLCS RLVVVSGEAA KALAENRQKE MIDKTTTISA  420
TREGKESKRE QVQNLAHGDR LGMNQADRDG SSGSGSDGGD VQNSRPMSPG TLALMCDEQD  480
KMFMAAELPN GITTNSQSTT QNPSQEIGCT EVYEEQERVI LTGFRDFLNL LITRGSIKET  540
MCSPIAKRER EIQKDSVEGG TPKKPRCEKA TYSNDIGKSP ASTNGKVLQS VVTYVSEVGL  600
PLKNNTGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-119	CPP family protein