PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0305811

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 1052aa MW: 115607 Da PI: 4.9615

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0305811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l RcHm_v2.0_Chr6g0305811 37 KGQWTPEEDEILRRAVQSFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	67	3.4e-21	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v++vk++G++ W+tIa++++ gR +kqc++rw+++l RcHm_v2.0_Chr6g0305811 89 KGPWSKEEDEIIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	46.5	8.5e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ RcHm_v2.0_Chr6g0305811 141 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1052 aa Download sequence
MDGDRTNSTP EGSGGDSIQR ARALHGRSSG PTRRSTKGQW TPEEDEILRR AVQSFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII VELVKKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLKSGLLP DLEGTPHVGH QNQPIISSCS RVQNSGDDSA PRGAEGEEIS 240 ECSQDSNVAG CFQSGTAMVN VVLHTRDRSH IREVSRLGND PSSSPASCSE PYYPSMGDAT 300 FSIPEIPPEI VSSSKFIEQS FSHDAGESMS GDFQFNMQEL TNISSLESEQ EASGMHTHCM 360 SSNEIHDVVN FPFQTAGAFP ASTSMGNMAD GSVKSERMLI SDDECCRALF SEAINQGYFS 420 RDFTNGLNMV DLIACTDSLL LQSSSNLQMS ETGRSSQLYC PLNSDVVGTS CSQPVSAHNG 480 PLIFAGEANN LFRVQEQEYV TNSEDGFVYT NDTARSPSNV VGNETRMQEQ SDLVEDPSNL 540 VPVNTFDSGL DTQTSPSLDV RSDVHTEQQD DGALCYEPPR FPSLDIPFLS CDLVQSGNDM 600 QQEYSPLGIR QLMMSSMNCL TPFRLWDSPS RDGSPDAVLK SAAKTFTGTP SILKKRHRDL 660 LSPLSPLSDR RIDKKLGTDV TSSLARDFSR LEVMFEDSET QEAPLHYPSS NQQRTSDAHE 720 EDKENMDTCE TRIEEGTGTV AISADEIAQK HFDDGESQEK MKQGNADVDA KTKADAVPSS 780 HDAQQSSGVL AEHNTNDLLL YSPDQAGCKA EKALSLSAGT PKVQHSKSFS AKQCSSVITP 840 TITVKKRESY LVTQTCIQSD LLSAPLETTS DNAGNGASTE TIFGVTPLKR SIDSPSAWKS 900 PSAWKSPSAW KSPWFINSFL PGPRVDTEIT IEDIGFFMSP GDRSYDAIGL MKQISEHTAS 960 AYANAQEVLG NETPESLLKE RRKDHGIVDS DKNLAPPNQL GSSSPSAPNV VVERRTLDFS 1020 ECETPGKGKE SGKFLNTKSF SSPSSYLLKG CR

Sequence ? help Back to Top

Protein Sequence Length: 1052 aa Download sequence

MDGDRTNSTP EGSGGDSIQR ARALHGRSSG PTRRSTKGQW TPEEDEILRR AVQSFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII VELVKKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLKSGLLP DLEGTPHVGH QNQPIISSCS RVQNSGDDSA PRGAEGEEIS  240
ECSQDSNVAG CFQSGTAMVN VVLHTRDRSH IREVSRLGND PSSSPASCSE PYYPSMGDAT  300
FSIPEIPPEI VSSSKFIEQS FSHDAGESMS GDFQFNMQEL TNISSLESEQ EASGMHTHCM  360
SSNEIHDVVN FPFQTAGAFP ASTSMGNMAD GSVKSERMLI SDDECCRALF SEAINQGYFS  420
RDFTNGLNMV DLIACTDSLL LQSSSNLQMS ETGRSSQLYC PLNSDVVGTS CSQPVSAHNG  480
PLIFAGEANN LFRVQEQEYV TNSEDGFVYT NDTARSPSNV VGNETRMQEQ SDLVEDPSNL  540
VPVNTFDSGL DTQTSPSLDV RSDVHTEQQD DGALCYEPPR FPSLDIPFLS CDLVQSGNDM  600
QQEYSPLGIR QLMMSSMNCL TPFRLWDSPS RDGSPDAVLK SAAKTFTGTP SILKKRHRDL  660
LSPLSPLSDR RIDKKLGTDV TSSLARDFSR LEVMFEDSET QEAPLHYPSS NQQRTSDAHE  720
EDKENMDTCE TRIEEGTGTV AISADEIAQK HFDDGESQEK MKQGNADVDA KTKADAVPSS  780
HDAQQSSGVL AEHNTNDLLL YSPDQAGCKA EKALSLSAGT PKVQHSKSFS AKQCSSVITP  840
TITVKKRESY LVTQTCIQSD LLSAPLETTS DNAGNGASTE TIFGVTPLKR SIDSPSAWKS  900
PSAWKSPSAW KSPWFINSFL PGPRVDTEIT IEDIGFFMSP GDRSYDAIGL MKQISEHTAS  960
AYANAQEVLG NETPESLLKE RRKDHGIVDS DKNLAPPNQL GSSSPSAPNV VVERRTLDFS  1020
ECETPGKGKE SGKFLNTKSF SSPSSYLLKG CR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein