PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0305101
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 339aa    MW: 36616.5 Da    PI: 9.9866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0305101genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31267324359
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h 
  RcHm_v2.0_Chr6g0305101 267 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 324
                             9************************9888****************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MAVEMMSFPK MEDQKAIQEA ASQGLKSMEH LIRYLSHQQL SNQPSSRVDC TDLTDHTVSK  60
FKKVISLLNR TGHARFRRGP VAAVPAHHHH HHQFSSSSSS TSLPFPPSQT LSLAPAPVAS  120
PAIAPPAPVK APETNFAHSM TLDFTRPNAL ASNPKCTDIE FSVSSSSSFM SSAITGDNSV  180
SNGKLGLFIA PNPAPAVSGA KPPLSAAPFK KRCHEHDHSD DVSCKLSGSG SASGSGKCHC  240
SKRRKNRVKK TIRVPAISSK IADIPPDEYS WRKYGQKPIK GSPYPRGYYK CSTVRGCPAR  300
KHVERAPDDP AMLIVTYEGE HRHAPDNMSG GVGMVFEST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.21e-104WRKY family protein