PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0302741
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 426aa    MW: 46186.2 Da    PI: 9.5813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0302741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-05186208223
                             EETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              Cp Cg+ F+  ++L+ H++  H
  RcHm_v2.0_Chr6g0302741 186 ACPQCGEIFPKLESLELHQSIrH 208
                             6******************9888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    
MALLTFQPEA TEPKKKKKQV QPQPPPPSKR SHQKHSSKKQ QPPPQKPPSS SWDHFKNLLT  60
CKQIEGSRVH DPSKNAIGYS KLGSSCGSIC SFRDVVHGNT TSRVVHRADN SPDSSSLGQE  120
TGLLSRKVTI RSESGSGTRS NRGGGAAYTS SNSSRGLQFR KLSGCYECHY IVDPSRYPVP  180
RSTICACPQC GEIFPKLESL ELHQSIRHAV SELGVEDSGR NIVEIIFKSS WLKKDSPICR  240
IERILKVQNT QRTIQRFEDC RDAVKNRALN STRKNPRCAA DGNELLRFHC TSISCTLGAR  300
GSTNLCGSIP GCGVCTTIRH GFQGGGGLEV GKGVRTTASS GRAHDSLHCT DGRRAMLVCR  360
VIAGRVRRIA DDAAAEEEAA ATASAGGSYD SVAGYAGVYS NLEELVVFNP RAILPCFVVI  420
YKALDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-159C2H2 family protein