PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0302391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family BBR-BPC
Protein Properties Length: 342aa    MW: 38381.5 Da    PI: 9.6543
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0302391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind389.16.5e-11913421301
               GAGA_bind   1 mdddgsre..rnkg..yye...........pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaern 71 
                             mdd g+re  r k+  +y+           p+ +s+k     q+m+++aerda+i+ernla+sekk a+aerdmaflqrd+a+aern
  RcHm_v2.0_Chr6g0302391   1 MDDGGHREngRLKAeqQYKaaqgqwlmqhqPHqPSMK-----QIMAIMAERDAAIQERNLAFSEKKTALAERDMAFLQRDAAIAERN 82 
                             8999998888777766788887777765443334555.....********************************************* PP

               GAGA_bind  72 kalverdnkllalllvensla.....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkk 151
                             +a++erdn++++l+++ens+      s++p+g+q+++g k++++ qq +++ p++++ ++++re++++++lp+   +++a +++++k
  RcHm_v2.0_Chr6g0302391  83 NAIIERDNAIATLQYRENSSLtsgnvSSCPPGCQISRGIKHMHNPQQhVHHlPHMNEASYGTREMHTNDSLPLPPDPPTAPKSRQTK 169
                             ******************988899999********************55559********************999888776666555 PP

               GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlP 209
                                   +pke+k+  ++kk+ ks +kvk+es+d +                             sk+++k++dl+ln+v++D+st+P
  RcHm_v2.0_Chr6g0302391 170 ------RPKEPKTMPPNKKPVKSPRKVKRESEDLNkmtfdrlhewkggqemcggaedlnkqlvvSKSDWKCQDLGLNQVAYDDSTMP 250
                             ......67777777777777777777777777744477888999******************************************* PP

               GAGA_bind 210 vPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296
                             +PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+kl+++LaaeG+dlsnpvDLkd WAkHGtn+
  RcHm_v2.0_Chr6g0302391 251 APVCSCTGVLRQCYKWGNGGWQSSCCTTTMSIYPLPAVPNKRHARVGGRKMSGSAFNKLISRLAAEGHDLSNPVDLKDNWAKHGTNR 337
                             *************************************************************************************** PP

               GAGA_bind 297 fvtir 301
                             ++ti+
  RcHm_v2.0_Chr6g0302391 338 YITIK 342
                             ****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MDDGGHRENG RLKAEQQYKA AQGQWLMQHQ PHQPSMKQIM AIMAERDAAI QERNLAFSEK  60
KTALAERDMA FLQRDAAIAE RNNAIIERDN AIATLQYREN SSLTSGNVSS CPPGCQISRG  120
IKHMHNPQQH VHHLPHMNEA SYGTREMHTN DSLPLPPDPP TAPKSRQTKR PKEPKTMPPN  180
KKPVKSPRKV KRESEDLNKM TFDRLHEWKG GQEMCGGAED LNKQLVVSKS DWKCQDLGLN  240
QVAYDDSTMP APVCSCTGVL RQCYKWGNGG WQSSCCTTTM SIYPLPAVPN KRHARVGGRK  300
MSGSAFNKLI SRLAAEGHDL SNPVDLKDNW AKHGTNRYIT IK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-138BBR-BPC family protein