PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr6g0302061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26574.1 Da PI: 8.9824 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.3 | 4.3e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRrng++KKA+EL vLCda+v+++++ss+gkl+e++s RcHm_v2.0_Chr6g0302061 9 KRIENVTNRQVTYSKRRNGLFKKANELTVLCDAKVSLLMVSSSGKLHEFIS 59 79***********************************************86 PP | |||||||
2 | K-box | 81.3 | 2.2e-27 | 71 | 165 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 yqk g +l+++++e++q++l+k+k+ +++L+r++ h++Ge+L++L + eL++Le+++e++++ +R++K +l+ +qi++ +kk +++ RcHm_v2.0_Chr6g0302061 71 YQKLLGIDLWKSHYETMQENLNKMKEINKSLRRQISHRVGECLNDLRFAELHSLEKEMESAVEVVRNRKLKLISNQIDTKRKKIRNA 157 78899999******************************************************************************* PP K-box 88 qeenkaLr 95 e n++L RcHm_v2.0_Chr6g0302061 158 TECNRRLY 165 ****9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MARGKIQIKR IENVTNRQVT YSKRRNGLFK KANELTVLCD AKVSLLMVSS SGKLHEFISP 60 STTTKQVYDE YQKLLGIDLW KSHYETMQEN LNKMKEINKS LRRQISHRVG ECLNDLRFAE 120 LHSLEKEMES AVEVVRNRKL KLISNQIDTK RKKIRNATEC NRRLYEYDAM EEPHYGLVDD 180 GGDYYDSAVI GYSANEDPHN VFPFRLQPSH HPNLHHGEGS SDLTTYSLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-74 | MIKC_MADS family protein |