PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0301741

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TALE

Protein Properties

Length: 428aa MW: 47643.7 Da PI: 6.629

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0301741	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.7	1.1e-09	351	388	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+++qV++WF N R + RcHm_v2.0_Chr6g0301741 351 FEHflHPYPNDSEKLMLASQTGLSKNQVSNWFINARVR 388 564459******************************88 PP
2	BELL	102.1	4e-33	213	283	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++e q+k+a L++lleeV++r ++y++q++ v+ssFe+v+g g+ak+Yt+lAlka+SrhF +L+dai+++i RcHm_v2.0_Chr6g0301741 213 KHEFQSKIANLITLLEEVEDRCEKYYHQMEEVMSSFEMVVGAGAAKSYTALALKAMSRHFGSLRDAIMSHI 283 789*****************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MVSQDSPPNQ ASSILHHFIV SDSMAAQNHM ENQHQLDAAY ASNFRTSTST YPQSLGQLPS 60 IHSLEERMSR SLDLLHAPPT VAAEGSDHMS HTRLLMDQHQ ALSLSLGSQM LLPHNSHSAH 120 YVTDDYSFMG NALASSSSSL NQQSLAAVIG NSRYLKPAQS LLEEIVSVGG KAVDISSEKH 180 FGKMYGGGRR GSMGLSSELK AELCCNGLMS ADKHEFQSKI ANLITLLEEV EDRCEKYYHQ 240 MEEVMSSFEM VVGAGAAKSY TALALKAMSR HFGSLRDAIM SHIYAEKRKL MQDFPKVSSG 300 LAQLSLFDRE CRQKRMSLQQ LGITHGQRQA AWRPIRGLPE TSVAILRTWL FEHFLHPYPN 360 DSEKLMLASQ TGLSKNQVSN WFINARVRLW KPMIEEMYKE EFADSSQDSN PVANSSMTGE 420 SNIDHTDD

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MVSQDSPPNQ ASSILHHFIV SDSMAAQNHM ENQHQLDAAY ASNFRTSTST YPQSLGQLPS  60
IHSLEERMSR SLDLLHAPPT VAAEGSDHMS HTRLLMDQHQ ALSLSLGSQM LLPHNSHSAH  120
YVTDDYSFMG NALASSSSSL NQQSLAAVIG NSRYLKPAQS LLEEIVSVGG KAVDISSEKH  180
FGKMYGGGRR GSMGLSSELK AELCCNGLMS ADKHEFQSKI ANLITLLEEV EDRCEKYYHQ  240
MEEVMSSFEM VVGAGAAKSY TALALKAMSR HFGSLRDAIM SHIYAEKRKL MQDFPKVSSG  300
LAQLSLFDRE CRQKRMSLQQ LGITHGQRQA AWRPIRGLPE TSVAILRTWL FEHFLHPYPN  360
DSEKLMLASQ TGLSKNQVSN WFINARVRLW KPMIEEMYKE EFADSSQDSN PVANSSMTGE  420
SNIDHTDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75430.1	1e-101	TALE family protein