PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0300471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25052.8 Da    PI: 8.8593
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0300471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-251462149
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            krien+sn+qvtfskRr+gi+KKA ELSvLC+a  avi+fss +k++ y
  RcHm_v2.0_Chr6g0300471 14 KRIENSSNKQVTFSKRRAGIFKKAGELSVLCGAHMAVIVFSSANKVFCY 62
                            79*******************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MSKKTQGRKK IEIKRIENSS NKQVTFSKRR AGIFKKAGEL SVLCGAHMAV IVFSSANKVF  60
CYGHPDIHAV IESYQNGLNS VVGADDKAQE VLMAEYNKEC EEKHKEEGEL KKKMAEMKAK  120
ANEKKMMMEM STSGNQVREG FWWDEPVDLV MLEEREREQY MMALETLRNK VADKAHHKKI  180
LSGTIAETSV PAVHRLYHMM TPNNCFGTGF GDQYGNHGFG I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-26M-type_MADS family protein