PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0299501

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 391aa MW: 43192.4 Da PI: 6.675

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0299501	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.5	1.4e-28	191	249	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p +++ tYegeHnh RcHm_v2.0_Chr6g0299501 191 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApTCPVKKKVQKSAENPCLLVATYEGEHNH 249 58*************************99************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MDSSTWVNTS LGLNLVANDS LQAMDEGQPP VPTITKKVGE FEGEYDIFES NLRSVKQEAG 60 AGGSVLMAQE LNRISLENKK LTEMLTVLCE NYNSLEAHVK ELMTTKQLAS ENESMILGNN 120 CLIKKRKSPV DDHQDYCNNV NMIGFTTNTS TGETSSSDEE AYKRPKEMSN VNLKISRVYV 180 RTDVSDTRLI VKDGYQWRKY GQKVTRDNPS PRAYYKCSFA PTCPVKKKVQ KSAENPCLLV 240 ATYEGEHNHI LPAEPQVITI DHGDHQGQGR NLITTALPLR HDHSSISLAP KRSSSPSSSP 300 TTVSMSMSSS SVLDSSTEPG SSFGYKPNQG RQASDDIYEE KATTFQQLLV QQMASSLTKD 360 PNFTTALAAA ISAGRFNILD QPHPHPPIPK W

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MDSSTWVNTS LGLNLVANDS LQAMDEGQPP VPTITKKVGE FEGEYDIFES NLRSVKQEAG  60
AGGSVLMAQE LNRISLENKK LTEMLTVLCE NYNSLEAHVK ELMTTKQLAS ENESMILGNN  120
CLIKKRKSPV DDHQDYCNNV NMIGFTTNTS TGETSSSDEE AYKRPKEMSN VNLKISRVYV  180
RTDVSDTRLI VKDGYQWRKY GQKVTRDNPS PRAYYKCSFA PTCPVKKKVQ KSAENPCLLV  240
ATYEGEHNHI LPAEPQVITI DHGDHQGQGR NLITTALPLR HDHSSISLAP KRSSSPSSSP  300
TTVSMSMSSS SVLDSSTEPG SSFGYKPNQG RQASDDIYEE KATTFQQLLV QQMASSLTKD  360
PNFTTALAAA ISAGRFNILD QPHPHPPIPK W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	2e-54	WRKY family protein