PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0299481
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 305aa    MW: 33770.5 Da    PI: 9.3634
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0299481genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.91.8e-2794154159
                             ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             ++Dgy+WrKYGqK+ k+++  pr+Y+rC++a +Cpvkkkv+r+ +d+++++ tYeg+Hnh+
  RcHm_v2.0_Chr6g0299481  94 VKDGYQWRKYGQKVTKDNPsSPRAYFRCSMApTCPVKKKVQRCMQDKSILVATYEGHHNHD 154
                             58**************997369********99****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MSRKYTRLES QLQLIRLDLQ QNKSSTHDDH DHHEMTTTGS GCSSYDIFDP TANKRARTTA  60
FSHCDHQQHH HFPVANKTSQ FLVRTDSKDN TLIVKDGYQW RKYGQKVTKD NPSSPRAYFR  120
CSMAPTCPVK KKVQRCMQDK SILVATYEGH HNHDIINNSN SLRLGQIISS SSSSPPAPAP  180
HNQIMSVDFP PAVVHGLLQS SSTSTAADPI TMRSPPSRRE PITLDLTLSG SKSKSNQEEN  240
RPGRGSPAGT TSTSTSTSTS TTDQTCENEK IQEYVTYLTK DPNFTVALAA AVARSIKTDQ  300
PARNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.16e-32WRKY family protein