PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0298531

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 942aa MW: 103251 Da PI: 6.9164

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0298531	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.8	2.5e-14	518	556	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC+k+kClk+YC+Cf+ag +C+ +C C++C+N+ e RcHm_v2.0_Chr6g0298531 518 CKRCNCRKTKCLKLYCDCFSAGIYCDTTCACQECFNRPE 556 79**********************************876 PP
2	TCR	48.1	2.3e-15	595	633	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a + Cs+ C+Ce+C+N RcHm_v2.0_Chr6g0298531 595 RHKRGCNCKKSMCLKKYCECYQASVGCSNGCRCEGCQNA 633 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence
MDSPDFTKTK ATASPSSDSP PVQESPVFSF INNLSPIKTV KATHIAPAFP GLSSPPLVFT 60 SPRVNPYTET SFLKRRSQHS ELSGAGIPKT HDEGKEFADS AADPVKPLTQ LQLGLITDTR 120 DCKTKNFVET HPCSSSGFVD EYLADSTEVD CVNSDQSVNP HLEHSSSVLE PSRSGLIKSK 180 ELTLTLGNKN DNATNSRTEA QAPFMTTEQA HEYNQGKQTF IAKLTRSEKQ RNDELRFNEC 240 TNIESSLSVD NAFRREYYQE FLDRGLRGEH QDDYDYCPPS LAGALHNGQL YEDENAGSIP 300 NRRIENAVMH ASKRRCLRFE EAPPCTSGKG DGSLSLLEKV SNSEPPTSTV ESEMVESPYV 360 DLITSTKTQT AASLPPRSTG KSRLTVSKPS GIGLHLNSIV NAASVVRGAT SIKLADRYMG 420 VQVMNSASIN VRRCPNSLNV VEKDSAGGVD WRNETETSVA ASSATTQSPH SVEFEHHGPI 480 HEIRISDSHS IDSYEECNQS SPNTKRKRAS RNIDSDGCKR CNCRKTKCLK LYCDCFSAGI 540 YCDTTCACQE CFNRPEYEDT VLETRQKIES RNPLAFAPKV VEREDESQFT PASARHKRGC 600 NCKKSMCLKK YCECYQASVG CSNGCRCEGC QNAYGKRGEF VDVDSGVSEE VISDKDGTEI 660 RESTFDEKLQ MVATRKDSND SPSLTPLTPS LQCFDDTHNV SKSRVLPAIC RPSPQSALTI 720 ISHHKNSTRS PQRNSENSDN LMDTSKGLLD VGSYDWREDY ENIGLETTSP RCYAVPTTCH 780 LTPLSGPGSL AITSSASLTT RDLTNASQVQ LRPGSHCLLS GSSLHWRSSP VTPMHRFGGM 840 KSFQGFDSEK GNHDLLQDDT PEILKDTSIP IKSVKVSSPN KKRVSPPHSH NHELGTSSSG 900 GLRSGRKFIL KAVPSFPPLT PCIGSKGSST IQNMNNPLQD KG

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence

MDSPDFTKTK ATASPSSDSP PVQESPVFSF INNLSPIKTV KATHIAPAFP GLSSPPLVFT  60
SPRVNPYTET SFLKRRSQHS ELSGAGIPKT HDEGKEFADS AADPVKPLTQ LQLGLITDTR  120
DCKTKNFVET HPCSSSGFVD EYLADSTEVD CVNSDQSVNP HLEHSSSVLE PSRSGLIKSK  180
ELTLTLGNKN DNATNSRTEA QAPFMTTEQA HEYNQGKQTF IAKLTRSEKQ RNDELRFNEC  240
TNIESSLSVD NAFRREYYQE FLDRGLRGEH QDDYDYCPPS LAGALHNGQL YEDENAGSIP  300
NRRIENAVMH ASKRRCLRFE EAPPCTSGKG DGSLSLLEKV SNSEPPTSTV ESEMVESPYV  360
DLITSTKTQT AASLPPRSTG KSRLTVSKPS GIGLHLNSIV NAASVVRGAT SIKLADRYMG  420
VQVMNSASIN VRRCPNSLNV VEKDSAGGVD WRNETETSVA ASSATTQSPH SVEFEHHGPI  480
HEIRISDSHS IDSYEECNQS SPNTKRKRAS RNIDSDGCKR CNCRKTKCLK LYCDCFSAGI  540
YCDTTCACQE CFNRPEYEDT VLETRQKIES RNPLAFAPKV VEREDESQFT PASARHKRGC  600
NCKKSMCLKK YCECYQASVG CSNGCRCEGC QNAYGKRGEF VDVDSGVSEE VISDKDGTEI  660
RESTFDEKLQ MVATRKDSND SPSLTPLTPS LQCFDDTHNV SKSRVLPAIC RPSPQSALTI  720
ISHHKNSTRS PQRNSENSDN LMDTSKGLLD VGSYDWREDY ENIGLETTSP RCYAVPTTCH  780
LTPLSGPGSL AITSSASLTT RDLTNASQVQ LRPGSHCLLS GSSLHWRSSP VTPMHRFGGM  840
KSFQGFDSEK GNHDLLQDDT PEILKDTSIP IKSVKVSSPN KKRVSPPHSH NHELGTSSSG  900
GLRSGRKFIL KAVPSFPPLT PCIGSKGSST IQNMNNPLQD KG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	8e-58	CPP family protein